Gene detail

Detailed information of ANN28211-RA in Leptoseris scabra

Genomic Location: Scaffold_13__1_contigs__length_39802057:38741870...38773119
NR annotation: KAJ7391086.1, Rho guanyl-nucleotide exchange factor [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28211-RA

ATGGATCCCGCAGAAAATCAAGACGGCCAGCACTTGATCCAACACTGTGTCATCATCCAACGTGATGAGAAAGGTTATGGCCTGACTGTTACAGGAGACAATCCAGTTTATGTACAGTCTGTGAAAGAAGGTGGAGCAGCTTACCGTACAGGTGTGCAAGTTGGTGATAAGATTATCAAGGTTAATGGAACCCTTGTGACGCATTACAATCACATTGAAGTTGTTAACCTTATTAAATCTGGTTCCTATGTTGCACTGACACTTTTAGGAAAACCACCAGCTCATCTTCAAGCAGAGAGGCATGGATCTACATCACCACCAGCGCTGGTGCCAAAAGACCCTGTGAAAGATGAGAGAACAATGGCTGTTCAGAGAGTGCTAGATCAAGAAAGACAGTTTTACAAGAAAACAAAGGAGGAGTATGCTAGAAAGCCATCAGATAAACTTCTGAAAGAGCTTGCAGAATCAGAAACTCGAATCAGAGCCTTTGATGCAGAACTCAATGCCTTATTGCAAGCTCAGCAGCCAGAGTCTTTTAACAATGGACCCTTCTCAGCACCCCCTGGTAAAACTGCACCTGCGATATGGCAGTCAAACAGGTGTCACTCACTCCCTGAAGATAATCTCAATCTGCCACTGGATCAAGACCCAAATGCACTGTACGACAACTATCCCCCATCAGCTGTTATTGGAGAGCCTCCTGGTGAGACTGGAGACAAGGATCTAAAGAGGCCCTCCTCTCCGCCTCAGCCACCTGAAAGAAAGTTCCTGCACACTGACAACCAGCTTGTGTTACCTGAAGGGCCAACCCATGTGAGGCAAGGTTCCAGTCCAGCAGCTTTCTTTCGCCCCACAACATATGGCAACTCCTCAGACAAAACTTTTGCTGTTAGAGATAATGGAAAGAAAAAGAGCCTTGATGATGTTTCAGGAATGCCACTGACATATGGCTACTTGACCTCTCCTGCTAAAACAAGAAAAAATCTACTGACATCATCTCTTCCGCGGACATGGACCCCACATGGTCATGAGAACAAAGCAATACGAATAGATGATGTAAATGGTAAAAGCAGCAGTAGTTCTCCCCCACCAACACCAACACTGTCAGAACCTTTGGAGAAGAGAAGAAATATTGATACTGGAGAGATATATACTGATGGAGATGAGGAAGCACCATCTTCTTCCACTGATAACAACAAGCTGGGTGTCATACAGCATGGTCCATCCATCAATTCTATTATTTCTATGGAAGATGATGACTTTGCTTCAGATGATGAGAAGATAGATGACCATGGACCATTCAATAGTTTGGATATGCTGAAAAATAAACCAGCTCACCTTGCTGTCTTCCTTCATTACCTTATATCTAACAGTGATCCAAGTAGTTTGTTCTTTTGGCTGGTAACAGATTCGTACAAAGAAGGAACACCAAAAGAAATGAAGAAATGGTCGTATGAAATCTACTCTACATTTCTTGCTGAGCGGGCACCTCTTAAAGTTGACATGGATAAAGAAACCATTGTAGAACCCATTGAGAGCTGCTTGGGATCTGAAGATAATCTCAAGAATGTGTTTCAACAAGCAAGAACTGCTGCAGGAGAAGAAATAGGAGAACTGTTGGCAGACTTTAGGAACAAAAGGGCTCTTGGTCTTGGTAGTTTGTTTGGAGATCACCAGCTTCAAGATGATGACATGGACAAGGGAAAGGAACTTCAAGTCGTGGAACAAACTCTTATGCCACATTTGGAAAGTGTCTTGGCTGAACTTGATTCAAATACTACTGCTGATGCTTCACAGATTGACAGAAACTCTGCTATGGCATCTGCTCTTACTACCTTTTTAAAACAAGTTGGACTCACCATAAAGCAACAGGGTAACAACACAAACATCCTGGAAAGATATTCAAGCTTCACACGGAAAGAGAATAAGACACTTTTTAAAATTAAAGCAAGCAAAAAGATCAAAGGGCATCATTTTGTCAGCACACACTACACCAGTCCAACCTTCTGCAATCACTGTAATAATCTACTGTGGGGAATTGGAGACCAAGGTTTTCAGTGCTCAACTTGTGAGTACAATGTTCACAAAGGAAACTGCTTTGAGTCAATTGAGGAATGTCCAGGGCCCAAAAAGAAAAGAGTAAGCCTAGTCTTTTGTTTATCCTTGTATACTTCATCTATCCTGGTAATTGTACTTAAAAACAAATAA

Transcript

ANN28211-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZN5	Rho guanine nucleotide exchange factor 12 OS=Homo sapiens OX=9606 GN=ARHGEF12 PE=1 SV=1
Q8R4H2	Rho guanine nucleotide exchange factor 12 OS=Mus musculus OX=10090 GN=Arhgef12 PE=1 SV=2
O15085	Rho guanine nucleotide exchange factor 11 OS=Homo sapiens OX=9606 GN=ARHGEF11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001658 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09128 all species →	RGS-like	Regulator of G protein signalling-like domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR020454 all species →	Domain	Diacylglycerol/phorbol-ester binding	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR015212 all species →	Domain	Regulator of G protein signalling-like domain	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45872 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0001664 all species →	Molecular Function	G protein-coupled receptor binding	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN28211-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.