Gene detail

Detailed information of ANN28270-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:86105...103739
NR annotation: KAJ7330602.1, HEAT repeat-containing protein 1 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28270-RA

ATGTCGTCCTTGGCGAAGCAACTACAGCAACTGCAAATTCCGGGCAGCTTACATCCCATTTCTGCTTCTAAAACCAGTAAAAAGGTATCACTGCTGTTTGATGCTAAGGAAGCAGCTGACATTGACAATGATACTGTGTTTTCAATCGGTGTAAATGGCTTGGATGAGCTCAAAGTTATCGAACCCTCGTTCTCGACCTTTGATAATTCTCTCTTTTGTGATACTTCCAAGTCGTTGGAGAGATCTTTGCAGACCAAAGAGGTGAATGAGAAGCTAGATAAACACATCTCAAAATTTCTGCAGTATTTATCTCCGTATTTCTTGCTAAAACCAGCTCACAAAGTCTTGGAGTGGTTAATTAGACGATTCCAGATTCACGTATTCAATGTTGATAGTTTGGTTACTTGTATTCTTCCTTACCACGAAACAAACCTTTTTGCACGCGTGGTACAACTACTGTCCATAAAAGACCCTTCTTCGAAATGGAACTGGCTGCGTCCAATCCAGAAAGCTGGTGTACCTCTTTCTAAGACAGCTTTCTTGCAACATTGCATTTCTGATTGTTCATTGTTGTCCCTAATCTGCGAGATGGTAACAGATGGAATCAAGTTGGAGATCCCTCCGTCCAGTTTAAGAGTTTTGTTCACATTTTACACTACCACAGTTGTTGGCATGCTGGATATGATGCCTTCTGTGACAGAGAAATTTTTAACTCATTTATTGCCCTACGTACTGGGAGGGTTGAAGTCTGGTATATCTGAACTCGAAGCTTCATCTTACATGATTGTGGCTCAGCTATGTTTCAAATGCAACATGGAAGAAAATCTGGTGAAATCATTCACTGAAAGCATTTGTAAGACTTTAAAGCCACAACTTGCTGTTGAAGGACTTTCTTGTCTCACTTACATTTGTCAGTCACAGTGTGTTAAGAAATTATCAAAAAGGTCTTTTAAATCCCTTTTAAAGCTCCCAGGTCTGGTCAAGATCGTTCAGCAGTTGTCATCTTCTCATGTAATCTCTCCGTTGTTGGACATTTTTGTGTCCCAGCTTATAAGCAGTGGAGTAAAGAATGCACCAACAGAAGAACAGAGTGATTCTACAACAAGCCCTCCATTAAAAATTGCCCAGGAATTACTAATGGATGTTGACTTTGAAAAGGACTCAGTCATCACCATTGGCAGGGTACTTCTTGAAGAGTATTGCAGTGTGCGTCAAACTCTCAGCGAAAACAAAAGTGAAATTAGCAGGTTAAATGAGAAAGTAATAGATCTGGTACAGGCTTTGGAGAAAAGGTACCCCACAGAATTAGAAAAGGCTATTGAGAGGCATTTAGGCTCCCTTAAGGCTGCTGAAGGTACAACTGAAGGAGATACAAGTCACCCGTCCTCCATATGGACCATGGAGCTGGTCTCTTTAGCACTCACAGGAGTCAAATCACAGGTTATCCCAGACTCCAGTAAAACACTGGTTTTGAGTCTTCATCATCCCCAATCTCATGTGCGAGAAATTGCTGTAAAACATCTAGGAGATCTTCTCAGAGGGAAGGAGAGTCTGTCAGAAGATAAAGAGTTTGTCAGTGAGTCATTGGTATCACGGCTTCAAGATGATGATCCTGCTATTGTGTCTTGTGTTCTGAAACTAGGACAGGTTCTTGCTGATAATCTTCCTGGACAGCAGTTTGTAGAAGAGATGTTCAAACTGCTAAATAAGAAATCATCTGACTGGGATGAGGTACGTGGTGAAGCTTTGCTGTTGTTGGTTGGCTCTGCTGATCCATCAGTTGCTGACAGGATTGCGTTTGGCCTGTTACCACATTGTGTCCAACATCGTCAATCAAGTGCAGTTGCTGTTCCCTTGTCAGTAACCATCAGCACATCTGTACTGGCTACTAAGCATCCTTTGTTGGCTGGAATGAAGGCCTTTGTCAAAAAGAAAGAGTGGAAGAGCTGTGAAAACAGCTGTGATGCTGATAAACTGACTTTAGCTGACAGCTTGTTAATCAATTGGCTTGGAGAAAATCTGACGAAGATGAAAGAGCATCAACTTGTTGAAATGGTGCAGAGCATGATAAGTCATGCCAAGAGTCTCCCAGATGATGATCTTTTTCATCTGCTTCTGAGGTGTTTGCTTGGCAGTGCAGTTTCTATGGCAGCAGGCCATTGTAAGATGATGTTATGCCAGATTGTTACAGAGTTTATCATACCTGACCTGTGGAAGGTTACAAAACTGCTGGGAAATTATGACGTACCTGAGAGTGAAATCCTCCAACATGAGCAAAGTGGAAAGGTTCCACTTCCTCTTCTGACAAGCTTGGTTAAGTTGCTTGGTAAACACAGTACCAAAAGGTTGAATCATGCTAAAGGTTCCATCACACTCTGGCTATGTGGCATTCTGTTAAAGAATATACCAGCTGAACCAGATGCTGCCAATGGACACTGGTGGTTTTCTAAAGGTGACACCTGTCCAGAGGACATGTACACCAAGCTTCTGGTGTCCCTGTTTGAGGTGGTAGCATTTGGGAGTGGTGCATCAGCATCTCATCAAGGGCAGTTTAAGGGGTTACTCCAAGGTCTATTTGAGTGCCATCTTGCAGACAAGCTTGTATTGTTGAAATTCCTGGGCCATCTGTGGTGTAAACCTCTCCACGGGGGAGGAGAAAGTGTATCAGCTCTGTTACAAGTTCAATGTTTACATATTGCTAATGCCTGTCTTAGTTCCATGTCTGGAAAAGTTGTAAAGGAACTGTCTAAACCAACATGTACAGGTGGGTGA

Transcript

ANN28270-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SY48	HEAT repeat-containing protein 1 OS=Danio rerio OX=7955 GN=heatr1 PE=2 SV=1
Q9H583	HEAT repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=HEATR1 PE=1 SV=3
Q9VM75	HEAT repeat-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=Heatr1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002638 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12397 all species →	U3snoRNP10	U3 small nucleolar RNA-associated protein 10	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR022125 all species →	Domain	U3 small nucleolar RNA-associated protein 10, N-terminal	Interproscan
IPR040191 all species →	Family	U3 small nucleolar RNA-associated protein 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13457 all species →	BAP28	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034455 all species →	Cellular Component	t-UTP complex	Interproscan
GO:0045943 all species →	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN28270-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.