Detailed information of ANN28305-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:556992...559542
NR annotation: XP_020620740.1, homeobox protein CHOX-CAD-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NHV9Rhox homeobox family member 1 OS=Homo sapiens OX=9606 GN=RHOXF1 PE=1 SV=1
P09080Homeobox protein HB1 (Fragment) OS=Tripneustes gratilla OX=7673 PE=2 SV=3
Q804R0Transcription factor LBX2 OS=Danio rerio OX=7955 GN=lbx2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012261 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR050460
all species →		FamilyDistal-less homeobox transcription factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24327
all species →		HOMEOBOX PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN28305-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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