Gene detail

Detailed information of ANN28341-RA in Montipora grisea

Genomic Location: Scaffold_172__1_contigs__length_171470:50569...53198
NR annotation: CEO98907.1, hypothetical protein PBRA_007021 [Plasmodiophora brassicae]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN28341-RA

ATGGGCCAGGAAATAATCTGCATACAGGTGGGGCAGTGCGGCAATCAAATCGGCGCCAACTTCTGGCAGGCCATAGCTGAGGAGCAGGGACTCGACACATCGGGCAAGTTTGTTCGCAAAAACAAAACGGTCGACGCCCGCCGGCGAGCCAAGGCCGAAGTCTTTTTTCGCCAGGTTGGGGCCGACCGATTTGTGCCCCGCGCGGTGCTCGTAGACCTCGAGCCAGGGACGCTGGATGTTATCAAATCGAGCCCGATGGGCACGATGTTCAAGCCCGACAACTTTGTGTTCGGCAACTCGGGGGCCGGGAACAACTGGGCCAAGGGCCACTACACTGAGGGGGCTGAGCTCATCGATCAGGTGCTCGATGCTGTCCGCCGAGAGGTTGACAGCTGTCGCTCGTTGCAGGGTTTTATGTTGTTCCACTCGCTAGGTGGCGGGACCGGTTCGGGGCTCGGCACCCTGATCTTGCGCAAGCTCAAAGACCTGTATCCAAAGCAACTTTGTGTGACGTTTTCGGTGGCACCTTCGGCCAAAGTTAGCGACGTGGCTGTCGAGCCCTACAATGCCGTGTTGTCCCTGCATCAGTTGATCGAAAATTCGGATCTAACTTTTTTGGTCGACAACGAAGGTCTACTCAATATTGCCCGCAATACACTCAAACAAAAGACGCCAAAGTACCCCGATTTAAACTGGGTGCTGTCGCACGCAGTCACCGGCGCCACGGCATCGTTGCGGTTCGCGAGCCGGGCACTGGGCGATCTGCGAAGCTTGGTGATGAACTTGGCTCCGTATCCGAGGTTGCACTTTGTCACGCTGGCCCATGCGCCCATGTATGCCGCGGGGTCGCAGCCCCGGGTAAAGCTGTCCGCTTCCCAGGTGACCGCCGAGGTGTGGAAGCCTCGCAGCTGGCTAGCGAGTTTCCGAGCCGATGCGAAAATTGTCGCTGCCGCGCTGACATATCGCGGAAACCCGACGGCCCGCGAGCTCGATCAGGTCGCTACCGACAACCTCGCCAACCCCAGCAGGTTTGTCGAGGCGTTCACCAACGGTGCAGTGGTGTCGGCACCCTCCACGCCCAAACCTCCAGTCAAAATCACCGCCACCATCGCGGCCAACACTACCGGTGTCACCGGCATGCTCCAACGGATCAATAGCGAGTTTGCAAACCTGTACAAGCGCAAAGCATTTTTGCATTGGTACAAAGGCGAAGGCATGGATGAGCAGGAGTTTCAAGAAGCGCATCGAAATGTCAGGGATCTAATCAGTGCTTATGAGAGCCTCGAACAAGCCACAGCAAGGGAGGTAAGACCGGTGCGCGAAATCATAACAATCGGCATTGGCGGTGCAGGGTGCTCGATGGCCCATCAATTTTGGCGTCGAGTGATGCGCGAGCACACCATCGACAACAGTGGTAGGCGGACCCACGACGACGGCCGTGGGCAGGCTTTTTTTGAGAAGTCCTCGAGCAATCGGTTTACGCCCCGGGCGCTATTCGTCGACCTAGACCCGGTGTCCGCCAAACAGCTTCGAGGTTCCGGCATCAAGGTTTATCACTCCGACTTTATGCTCAGTGGCGATGCCGGCACAGGTGGAAACTTTGCCCGCGGTCGCTACGCGGCAGGAAGCAAGTTGATTGCCAAGGTCGAGGACCGGTTGCAAAAACTCGCCGATCAGACAAAAAACCTACAGGGTTTTTTGATCTTCATGGCCCTGGGTGGGGGAACGGGCTCGGGCCTTGGAGCCTGCGTTCTAGAGCGGTTGACAGCCAAGTACCGCAAAAAAGCAAAGGTGGTGTTTGGCCTGTTTCCAGCACAGACTCTGCGCTCATCGCTCGTTGAGCACCACAACGCAGTACTCACAGTTCCGACGTTGCTCGACCACAGTGACATCACCTTTGTGTGCGACAACGACACGCTACGCCGGACCTGCACCGCGAACTTAAACATCAAATATCCGACGTACGACGACATCAATGAGCTCATCTCGCGGGCAGCAGCAGACATCACCGCCGGCATCCGATTTGAGACCGGCGACCTCGCCGACCTAGCGAGCTTGCAGACCAAATTAATCCCGAGCCCAAGACTACAGTTTGTCACAATGTCGACTGCTCCCACCACCACCAAGGCGAAGGTGGGGACCGCAGACACCAACATCCAATCGATGATGGTCAAGGCCGTACAAGACGAGCCAGCAGGCGACAATACAGCAAAATACCTGTCAGCAGCGCTTGTCTGCCGCGGGCCAATTGCCGTGAAAGAGATCAACGCCGCGGTCTCTTGGATCACCTCCCAAAACATACTGACATTCGCCCCAAATATGCCAACCGGCCTGTCACAAAGTCTCGTTGAGACCCCAACTGGTAGCCTGAGTGACGATAATGCCGGGGCCGTGGGCCGAACCGTTACCCTGCTGAGCAACACCACCGGCGTTGCCAAATACCTGCGTGAACACGTCACCGATAGGTTCGACCAAATGTTCGCGGCAGAAGCGTTTGTACATGCATACGTAGATGCGGGGCTCGAGCCCGGAGCGTTCGTGCAGGCGCGGGACAACCTGAGTGTGTTGGCCAATGACTATGAGATCTAG

Transcript

ANN28341-RA

Protein

Uniprot

Uniprot term	Description
P53375	Tubulin beta chain OS=Penicillium digitatum OX=36651 GN=TUB2 PE=3 SV=1
P29513	Tubulin beta-5 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB5 PE=2 SV=1
P41799	Tubulin beta chain OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=tubB PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000217	Family	Tubulin	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR002453	Family	Beta tubulin	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11588	TUBULIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10389	TUBG; tubulin gamma	-	Cytoskeleton proteins	ko04812	deepkoala