Detailed information of ANN28423-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:2433100...2439512
NR annotation: CAH3036529.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DJK9Probable splicing factor YJU2B OS=Xenopus laevis OX=8355 GN=yju2b PE=2 SV=1
P13994Probable splicing factor YJU2B OS=Homo sapiens OX=9606 GN=YJU2B PE=1 SV=2
Q5EA37Probable splicing factor YJU2B OS=Bos taurus OX=9913 GN=YJU2B PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005463 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04502
all species →		Saf4_Yju2Saf4/Yju2 protein FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007590
all species →		FamilySaf4/Yju2 proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12111
all species →		SPLICING FACTOR YJU2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005684
all species →		Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0008380
all species →		Biological ProcessRNA splicingInterproscan
GO:0071014
all species →		Cellular Componentpost-mRNA release spliceosomal complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13115CCDC130; coiled-coil domain-containing protein 130-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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