Genomic Location: Scaffold_69__1_contigs__length_370654:185157...186710
NR annotation: MYC69238.1, GAF domain-containing protein [Gemmatimonadota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN28425-RA |
| Transcript |
| ANN28425-RA |
| Protein |
| ANN28425-RA |
| UniProt accession | Description |
|---|---|
| P12626 | Nitrogen fixation protein AnfA OS=Azotobacter vinelandii OX=354 GN=anfA PE=4 SV=1 |
| P12627 | Nitrogen fixation protein VnfA OS=Azotobacter vinelandii OX=354 GN=vnfA PE=1 SV=1 |
| P27713 | Nif-specific regulatory protein OS=Herbaspirillum seropedicae OX=964 GN=nifA PE=4 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006783 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13185 all species → | GAF_2 | GAF domain | Domain | Interproscan |
| PF00158 all species → | Sigma54_activat | Sigma-54 interaction domain | Domain | Interproscan |
| PF02954 all species → | HTH_8 | Bacterial regulatory protein, Fis family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003018 all species → | Domain | GAF domain | Interproscan |
| IPR002197 all species → | Domain | DNA binding HTH domain, Fis-type | Interproscan |
| IPR029016 all species → | Homologous_superfamily | GAF-like domain superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR025944 all species → | Conserved_site | Sigma-54 interaction domain, conserved site | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR002078 all species → | Domain | RNA polymerase sigma factor 54 interaction domain | Interproscan |
| IPR025943 all species → | Binding_site | Sigma-54 interaction domain, ATP-binding site 2 | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32071 all species → | TRANSCRIPTIONAL REGULATORY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0008134 all species → | Molecular Function | transcription factor binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02584 | nifA; Nif-specific regulatory protein | - | Transcription factors | ko03000 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
