Genomic Location: Scaffold_2141__1_contigs__length_45461:582...2930
NR annotation: WP_191858699.1, NAD(P)/FAD-dependent oxidoreductase [Hanstruepera ponticola]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN28450-RA |
| Transcript |
| ANN28450-RA |
| Protein |
| ANN28450-RA |
| UniProt accession | Description |
|---|---|
| A5FJT9 | Ferredoxin--NADP reductase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=Fjoh_1507 PE=3 SV=2 |
| A0LXL9 | Ferredoxin--NADP reductase 1 OS=Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803) OX=411154 GN=GFO_0125 PE=3 SV=1 |
| A0LY71 | Ferredoxin--NADP reductase 2 OS=Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803) OX=411154 GN=GFO_0330 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0030412 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10609 all species → | ParA | NUBPL iron-transfer P-loop NTPase | Family | Interproscan |
| PF07992 all species → | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019591 all species → | Family | Mrp/NBP35 ATP-binding protein | Interproscan |
| IPR033756 all species → | Family | Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 | Interproscan |
| IPR000808 all species → | Conserved_site | Iron-sulfur cluster carrier protein-like, conserved site | Interproscan |
| IPR023753 all species → | Domain | FAD/NAD(P)-binding domain | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR022890 all species → | Family | Ferredoxin--NADP reductase, type 2 | Interproscan |
| IPR044304 all species → | Family | Iron-sulfur protein NUBPL-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42961 all species → | IRON-SULFUR PROTEIN NUBPL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016226 all species → | Biological Process | iron-sulfur cluster assembly | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0140663 all species → | Molecular Function | ATP-dependent FeS chaperone activity | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0004324 all species → | Molecular Function | ferredoxin-NADP+ reductase activity | Interproscan |
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
ANN28450-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
