Detailed information of ANN28475-RA in Montipora grisea

Genomic Location: Scaffold_3480__1_contigs__length_36168:21508...23686
NR annotation: MBA4717989.1, RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 [Nitrosopumilus sp.]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O26140Probable tRNA pseudouridine synthase B OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=truB PE=3 SV=1
O30001Probable tRNA pseudouridine synthase B OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=truB PE=3 SV=1
Q8TZ08Probable tRNA pseudouridine synthase B OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=truB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13207AAA_17AAA domainDomainInterproscan
PF08068DKCLDDKCLD (NUC011) domainDomainInterproscan
PF16198TruB_C_2tRNA pseudouridylate synthase B C-terminal domainFamilyInterproscan
PF01509TruB_NTruB family pseudouridylate synthase (N terminal domain)FamilyInterproscan
PF01472PUAPUA domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012960DomainDyskerin-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032819DomaintRNA pseudouridylate synthase B, C-terminalInterproscan
IPR004521DomainUncharacterised domain CHP00451Interproscan
IPR002478DomainPUA domainInterproscan
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR002501DomainPseudouridine synthase II, N-terminalInterproscan
IPR004802FamilytRNA pseudouridine synthase B familyInterproscan
IPR026326FamilyProbable tRNA pseudouridine synthase B, archaealInterproscan
IPR036974Homologous_superfamilyPUA domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23127CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0000495Biological Processbox H/ACA sno(s)RNA 3'-end processingInterproscan
GO:0031118Biological ProcessrRNA pseudouridine synthesisInterproscan
GO:0031120Biological ProcesssnRNA pseudouridine synthesisInterproscan
GO:0031429Cellular Componentbox H/ACA snoRNP complexInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03177truB, PUS4, TRUB1; tRNA pseudouridine55 synthaseEC:5.4.99.25
Transfer RNA biogenesisko03016deepkoala

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