Gene detail

Detailed information of ANN28606-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:6788192...6814073
NR annotation: CAH3155729.1, unnamed protein product, partial [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28606-RA

ATGTCTCGCGCTTTGTTTTATGGCATTTCTCGTTTACGTGGAATACAGGGCAGATTAGTAGCGTCTCGTGTCTTTAAAGCTGTTGGAGCAAGAGCGGTATCTAGCGGGGTTAAGTTTAAAGTTATCGATGGTTCGATCGATAGAAACAGTCCAGAGTTTCTTTCGAGGATCCCAGAACGAACTGAGCTGTTGAAATCTTTTGAAGAAGTTACGAACTTAGTGCTACAAGGAGGCGGCGAGAAAGCCATCGAGAGGCACACAAAGCGTAACAAGAAGCTCCTAGTTAGAGAAAGGCTTAGCAAACTCTTGGATGATGGTACAGAGTTCCTAGAACTGTCAAAATTTGCTGGGGTTAACCTCGAGTATGGCGATGTGCCGTGTGCTGGGATTGTGTCGGGTGTTGGGCAGATATCTGGACAGCTGTGCGTCGTTGTTGCTAATGATGCAACGGTGAAAGGTGGAACCATTTACCCGATTGCTGTAAAGAAGCAACTGAGGGCACAGGAGGTTGCAGAAGTGAATAAACTTCCTTGTATATTTCTTATTGATTCGGGAGGAGCATTCCTGCCTTTACAGGCTGAAATATTCCCAGAAACTGGAGGGCGAGTGTTTTATAATGAAGCTGTCATGTCTATGAAGGGAGTTCCAACTGCTGCTACTGGTGAGGTTGTCACTGCTGAAGAACTTGGTGGTGCAATGATGCATTCTAGGTTGGTATTCTTTGAGGTTGGGGGTAGTGTCAGTGGCTGTACAGATCACTTTGAAGAGGATGAAGAAAGTGCATTAGAGACAACAAGAAATATTGTTGCGACACTGAATGGGGAACAGCACATTACACCATCAGATGTACAAGCTCCTTTGTATGACAGTGATGATCTCTTAACCCTTGCACTCTATGACAGTTCACAATTTCCAATTTACCAGATATTATCTCGACTGGTAGATGGAAGTCAGTTTCAGGAATTCAAAACAAAATTTGGACCAACACTCATAACAGGATTTGCTCACATCTTTGGATACTTGGTGGGAATTGTGGCTAACAATGGCTTCCTGACTTCGGAGGCTTCCTTAAAGGCGAAATCAACTAATATGAATGCCACTTTAGGCGACAGAAAGGGAAAGTTTTATTTGACTCCATGCAGTCTTTACTTCGTTTGTCTTTCGTTCGCTTTTGCTGCAAACACCCTGATCATGGTGACGATTTTGCGAACGCCGTCTCTCCGCTCACCGACGTTTTTCTTCGTTTTCGGCCTGGCTGTTTCAGACTTTGGTGTTGGGCTGCTAGCGCAACCCTTGTACGTCCTGTACAAGATAGCGGACTTGTACAGGAACACCAAGCTTAACTGTGTAGCTGGGATCTCGTTCGCCCTGGTGTCTTATCAACTTGCTGGCGTGTCATGTTTGACTATGACCTTAATCAGCGTTGACCGCTTTTTGGCGCTGTTCTTGCACCTCAGGTACAACGAACTCATGACGCTTTCCAGAGTCAAAATCGCCCTGGTTTGCGCGTGGATTTTAACCGCCTTTATGAACATAGCATGGGTCTTAAACTTGCAAGTGTACTACTTGCTAGCGGCTTCTGGTTTCTCGCTGTTTCTAATCATCACCCTTTTCTCGTATGCCATGATATTTCGCACCGTCCGCATGCACCGCCAACAAATACAACAACAGTCCATTGCCGTCTCAAATCTGAGAGCCACTTCTTCGCAGGACAACTCTACTCAAGACAACCCAACCTCAAGCAAAACCGCGACTGATCGCAGTAATCGAAAAAGGCTAGACTCGGTGGCTTACAAAAAAGTCCACAGTGAATCCGTTTCTTTGTTGTATTTTGATGAAAGATCTTCGCAAAGAAGTTTGGAAGACGCTGAGAAGAATGGCGCGCACTTTGTGGAGTTATGTTGTCAGCGGAATATCCCTCTAGTGTTCCTACAAAACACTGCTCCCCAGTCCCTGGCCGGTTTATCATTTGAGGCGCGCGCCTGCGTGATTAAGGATCAAGCCAAGATGATGACAGCGGTAGCTTGCGCTCAGGTTCCAAAGATTACTGTCATAATGAAAGACAGCTTTGGACCGAGCAGTTACGCAATGTGTGGGCGCTCGTTTGATCCTCGTTTCCTGTTCACGTGGCCTACTGCCCGGGTTGCCATGGATACAGCAGAGGATATGGCAGACGTGTGTTGTGGCGAGAATGAAATCGAAGATGATAAAACCAACGAGGAGAAACAAAAGGCATTGAAGGACCAAATTCTGAAGAAGTTTGAGAAGGAATCATACGCTTACTACGGAACAGCTCGACTATGGGATGATGGTGTTATTCTGCCTCAAGATACCAGAAAGGTCCTGGGTCTGAGCTTACGAGCAGCCCTCTCCTCATTCTCCCGCGGACAAGGCAACAAATTTGGTGTTTTCAGAATGTAA

Transcript

ANN28606-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V9A7	Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Mccc2 PE=2 SV=1
Q3ULD5	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus OX=10090 GN=Mccc2 PE=1 SV=1
Q5XIT9	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mccc2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001327 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01039 all species →	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR011762 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, N-terminal	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR034733 all species →	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR045190 all species →	Family	Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22855 all species →	ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004485 all species →	Molecular Function	methylcrotonoyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006552 all species →	Biological Process	L-leucine catabolic process	Interproscan
GO:1905202 all species →	Cellular Component	methylcrotonoyl-CoA carboxylase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN28606-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.