Gene detail

Detailed information of ANN28647-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:7785903...7797767
NR annotation: XP_029188882.2, uncharacterized protein LOC114956047 isoform X1 [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28647-RA

ATGGCTTCACCTCAAGCTACGAAAACGTGGGGTGGGAAGGAATTCTGGGGATTGAGTTGGGATTATGATCCCCAGTGGCTGCTCAACGAAGAACAAAAGGAAATTCAAGCAAAACTGATCGAGACTTGTAGGACAGTGGTCAGACCGAACGCTATTATATGCGATGAAACCTATGAATTTCCAAGAAAGAGTCTGGACGCGTTGGCGTCGCTTGGGCTCCTGGGACTTATCGTGCCTAAAAAACTTGGTGGCCTGGGGCAGAGTCACGTGTGTGCTGCTATGGTTGTGGAAACAATCGCCAGATATGGCTGCCCGAGTACCGCAATGGTTTATGTGATGCACCTAGGTGCAGTCGCATCGATGCTGTTCCGCCATCACACCAACAAAACTCTTCAAGATGTACTCAGAAGACTCGACAAAGATAAATTGATTGGCACATTGGTGTTCAGTGATCCTGCTACAGGTGGCCACAACTGGTTTCCTTTCTCCTCCAAGGCCAAGCAGTTAGATGACAACACCATCCAGGTTTTGCGGTACGGGGCCTGGGTAACAAGCGCTGGATTTGCAGATTTTTACGTTGTTGAATGCACGAGTCCGGCCTTTAATGGCGACTTCATGAACCTCAGCCTCTATCTTATGTTTAAGGACGAAGTTCGCTCTAGCACTGATGAGTGGTCGGCGTTGGGCATGCGCGGTAACCAGTCCGGCCCCGTGGTGTGTGAAGGGATCCTGATGGCCGAGAGGCTTGTTGGGTCATTTGGTGAATTCCCACTGGCTGCTCATGAGGTCATCGATCCATACTTCCTGCTATTTAGCTCGGCCTGTTGGAACGGAATATCCCTAGGTGCTATTGATATCGCAAGGAAGCACGTGATCAGAACAGAGCATACTGATACGGGCATGCGTGTAGCTGACTATCCAATTATTCAGGATTACTTTGGTAAATCCTTGACAGAAACAAACTGCTCTCGAATGATGCTCTTCAGTGTGGCACAGGGAATGGATCACGTGACCAACAACAACGACTGGTCCATTTACAAGGAGCCCATGATGGTACCAATTCGAGGTCAATTTCATCACTGGTGTTTTCAAGTTAAGATCAAAGCTGCGGCCAACGTCGCTTACGTCACAGATGAAATGATGCACGCCTGCGGAGGAGTTGGCTACAAGAAGGAGTTGGGCTTGGAGCGTTTGCTACGTGATGGCAAGGCAGGATGGGTAATGGGAGCTAGCAATGAGGTGCTCAGACAGATAGTTGGAAAAACGAGCCTGTTTGGTCTCGGCGCAGTGGACTTCTGGCTGAAGCTTCCAGATAGTCGCATTCTTAACTCCGAGCTTAGGAAACTAAGTGGAGATGCAAAGAGGGAATTAGCACGGAAACTGCTCGCTGAAGCCGAAAACGAAGTTTCGATAACGAAAAACCATCAGTCTTTGTATCAGGACACGGAGTTTGACAACCCATTTAGCACCAAACCCCCGGCAATGCTGACATCTCTGGACATTCCTGACGGAGTTACGCATGCGCGTGAGCCTTGCCTCAAACCGGATGAATTTGTCGCCTTGAAACTGCAGTCTGTAAAACCTCTGGGTGAAATGGTTGCTGAGTATACTTTTGACTTGCCCCATGCCACCGATTATACAGGATGCTTCCCCGGTCAATATGTCCGAGTGAGGCTTGGGAAGAACCAGCGGTTTCTTTCGCCTGTGACACGCGCGAAGGAACTTGGCAGAATTTCGCTGTTGCTGAAACACGAGACGCATGGAATGTTTTCTTACTTCATGCGCTCTCTTGAAGTCGGTGATACCGCAGATTTCTCCGGACCTTGCGGTGGATACGAATACGAACCAAACACGACCAGTCACCTGACCTTCTTGACAACCGGTATGTCATGCCAGCCTGCAGTCCAGATTGTGCGTGAAATAATGGCGAATCCAAGCGACAAGACTTCCGTTTCTCTACTACTCTATGCTAACAAGCCAGCTGATATCCCATACAGACAAGAACTACAAAAGTACGCTAACAACGACAAGCGATTGAAAGTGTCATTTACCGTCAGTGAAGTCGACCGCGATGATTGGGAGGGAACGGAGGGTTATATCGATTCCAAGCTGCTATCCAGTGCGCTCCCTCCCCCCGACGAATCCAGTCATCGAGTGTTAGTGTGCGGGGGGCCTCGCATGGTCATGGGCGTGCTTCAGGGGCTTCACGGAGCAGGGTACTCAAGCGAGAAGATCTTTGTGTACGGTCAGTTTGGGGTCCAACAGATTAGAGCTGTCTATGGAAAATTTGCGAAGCTTGCGGAGCACAGGGAGACCAGTAATAACGTCAAAAATGGATATTATTAA

Transcript

ANN28647-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8HXY7	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis OX=9541 GN=ACADVL PE=2 SV=1
P49748	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADVL PE=1 SV=1
P48818	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=ACADVL PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005572 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00970 all species →	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001834 all species →	Family	NADH:cytochrome b5 reductase-like	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR008333 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19370 all species →	NADH-CYTOCHROME B5 REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00615	E2.2.1.1, tktA, tktB; transketolase	EC:2.2.1.1	Biosynthesis of ansamycins	ko01051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.