Gene detail

Detailed information of ANN28652-RA in Montipora grisea

Genomic Location: Scaffold_4068__1_contigs__length_33470:21532...25004
NR annotation: MBL4804174.1, dihydroxy-acid dehydratase [Alphaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN28652-RA

ATGTTTGATGAAAAACGCGCACACCCAAACGGATGGGACAAAGACAAACTTGTTTCCCGTTATGTTACCGAAGGACCGGAAAGCGCACCGCACCGCGCTTATTACTACGCAATGGGCATTACGGAGGAAGAAATTCATCAGCCGCTTGTCGGGGTGGCGACATGTTGGAATGAAGCAGCGCCATGTAATATTGCGCTTTCTCGTCAGGCACAGGCGGTAAAGGTCGGTGTCAAAGAAGCCAAGGGTACACCCCGCGAGTTTACAACAATTACAGTGACTGACGGTATTGCGATGGGGCATGAGGGGATGCGTTCTTCGCTTGCGTCACGCGAGGTTATTACGGATTCCGTTGAATTGACGATGCGTGGCCATTGTTATGATGCGCTTGTCGGTCTTGCGGGCTGTGACAAGTCCTTGCCTGCGATGATGATGGCGATGGTTCGCCTGAATGTGCCATCAATCTTCATGTATGGCGGTACGATATTGCCCGGTAAGTTCCGTGGTCAAGATGTTGATATCGTTAATGTGTTTGAAGGCGTTGGTAAACACTCTGCCGGGGAGTTCAGTGATGATGACTTGAAAGAACTGGAATGTGTGGCTTGTCCGTCGGCAGGTGCTTGCGGTGGTCAGTTTACGGCTAACACTATGGCGTGCGTTTCTGAAGCGATGGGCTTGGCGTTACCACACTCTGCAGGAGCACCTGCGCCTTATGAATCCCGCGACGAATATGCGAAGGCTTCGGGCGAAGCTGTGATGAATTTGATCAAGAATGGTGGTCCGTATCCGCGTGATGTCGTGACCCGTAAAAGCCTCGAAAACGCGGCTGCAATTGTTGCTGCGACTGGTGGTTCGACCAATGCAGCTCTGCATTTGCCCGCAATTGCACATGAAGCGGGAATTGAATTCAATCTGTTCGATGTTGCGGAGATATTTAAAAAGACGCCATTGATTGCCAATTTGCGCCCGGGCGGAAAATATGTCGCCAAAGATTTGCATGATATCGGCGGTGTCGGTGTTGTGATCAAGGAGCTTTTGGATAACGGATATCTACATGGTGATTGTATTACCGTTACCGGTAAAACACTGGCGGAGAACTACGCCGATGTGACTTTGCCGGAAGGGCAGGATGTGGTGTTCCCGTGTTCTAATCCTATTCACCCGACAGGCGGTGTTGTTGGTTTGAAAGGTAATCTGGCGCCAGAGGGCGCAATTGTGAAGATTGCGGGTCTGGAAGAGCTGCAGTTTGAAGGACCTGCGCGCGTGTTTGAAGGTGAGCAGGCCGCGTTCGACGCCGTTCAGGCTCGTGAATATGAAGACGGTGATGTTATCGTTATTCGTCAGGAAGGGGGCAAAGGTTGCTCTGATTACCGATGGTCGTTTTCGGGCGGTACACGTGGTTTTTGTATCGGGCACGTTGGCCCGGAAGCCGCTGTCGGCGGACCGATCGGTTTGCTGAAGGATGGTGATGTCATCAGCATTGATGCAGTGAAAGGCACGCTTGAGGTCGCACTTAGCGAGGACGAGTTGGCTGAACGCAAGAAATCATGGAAGCCACGTAAGACGAATTACAATAGCGGTGCTTTGCAGAAATATGCGGCTCTTGTCGGTCCTGCCCGTGATGGTGCGGTTACGCATCCGGACAGATTGGCGACTTATGACGGTGTTTCAGCTGAGGCTTTATTGACCCAAAAAGCAGGTGTTGACGGTGCTCTGAAGCGCTTGTTCACAGTATTAGTTGAGTTTTATACGGCTCGTGAATTTGAGCCTGTGTGGGTTGGTTCAAACAGGGTCAAGTCATCGGGTAAAGATATGTTCGAGTTGGTTGAGGAAAGCTGGCTTCACGGTCTTAATCCATACGCCTATCATATGGAGGCGTTAAGCGCCCGTATGAATGAGCGCGGGCAGGATAATCTGGCCTATGTAGAGTTGTTGCTAACTGATGCTTATTTGAGGCTTGGTCATGATTTAAGCGGGATACGTGCCGTGCCTGCGCTTCGCGTGCGTTTGGGGATTGACGCCCCGCAAACGGAAGACGAGCTACTTTATGATGATCAACTGGCCGCGGCTGTCATCAAGTTTCAGCGCGACAATGATCTTACCGATGACGGGTTGGTTGGGAAGCAAACGCTCGAAATTCTGAACAAGTCTCGTAAGGATCGTATCAACCAGCTTATCGCAAACCTTGAGCGGTTACGTTGGGTTGAAGACGAGAAGCCTGAAGATTTTGTGGTTGTTAATGTGCCTTCAGCAACGTTGTGGGCGATTGAAGATAATCGTGTTGCATTCGAAATGCCGGAAGACCCTGAGTATTTGATGCAAAAGGGGATGCAACTCATTAGTGGACGCGGAGAAGGTGCAATGACCCTTGACCCCGCCTCAATGGACTGGACGGAGGTGAGTGAGGAGGAGTTGACAGCCTTACGCATGGTGCAGGTACCTGGGCGTAACAACCCTCTTGGGCTTTACCGGGTGCATATGCCGAACAGCTACAATATCTATCTGCATGATACGAATGAGAAATATCTGTTTGACCGTGCGTCTCGCGCTGTGTCTTCGGGGTGTATCCGCATGAAAGATCCGGAGCGTATGGCTCATTTTATAATGAAGCAGCGTCCGGGCTGGTCTCAGGACAGACATGACAGAATTCTGGCCTCGGCCGAGAAGACGGATCTCTATATTCGTGACCCCATTCCTGTATATATTCTGTATTACACAGCGTGGCTCGATTCATCCGACGAATCATTTACGGACAAGATTTATACGATTTTGACCGAAATTTGA

Transcript

ANN28652-RA

Protein

Uniprot

Uniprot term	Description
A7HXI4	Dihydroxy-acid dehydratase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=ilvD PE=3 SV=1
Q89KY5	Dihydroxy-acid dehydratase 2 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ilvD2 PE=3 SV=1
A8LKN5	Dihydroxy-acid dehydratase OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=ilvD PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00920	ILVD_EDD	Dehydratase family	Family	Interproscan
PF20142	Scaffold	Scaffold domain	Domain	Interproscan
PF01471	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan
PF03734	YkuD	L,D-transpeptidase catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020558	Conserved_site	Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	Interproscan
IPR005490	Domain	L,D-transpeptidase catalytic domain	Interproscan
IPR000581	Family	Dihydroxy-acid/6-phosphogluconate dehydratase	Interproscan
IPR045380	Domain	L,D-transpeptidase, scaffold domain	Interproscan
IPR042096	Homologous_superfamily	Dihydroxy-acid dehydratase, C-terminal	Interproscan
IPR038063	Homologous_superfamily	L,D-transpeptidase catalytic domain-like	Interproscan
IPR050165	Family	Dihydroxy-acid dehydratase IlvD/Edd	Interproscan
IPR036366	Homologous_superfamily	PGBD superfamily	Interproscan
IPR002477	Domain	Peptidoglycan binding-like	Interproscan
IPR037237	Homologous_superfamily	IlvD/EDD, N-terminal domain	Interproscan
IPR036365	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR004404	Family	Dihydroxy-acid dehydratase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21000	DIHYDROXY-ACID DEHYDRATASE DAD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan
GO:0016836	Molecular Function	hydro-lyase activity	Interproscan
GO:0004160	Molecular Function	dihydroxy-acid dehydratase activity	Interproscan
GO:0009082	Biological Process	branched-chain amino acid biosynthetic process	Interproscan