Gene detail

Detailed information of ANN28666-RA in Montipora grisea

Genomic Location: Scaffold_380__1_contigs__length_102645:69613...72973
NR annotation: WP_014951277.1, MULTISPECIES: acetyl-CoA carboxylase biotin carboxylase subunit [Alteromonas]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28666-RA

ATGCTAGATAAAGTACTTATTGCTAACCGTGGTGAGATTGCCCTGCGTATTTTGAGAGCCTGTAAAGAACTAGGCATCAAAACCGTAGCAGTGCACTCTACTGCGGATAAAAACTTGAAGCACGTGTTGCTGGCTGACGAATCAATTTGTATTGGTAAAGCATCAGCAACCGAAAGCTACCTGAACATTCCTCGCATTATTGCTGCTGCAGAAGTCACTAACTCTATTGCTATTCACCCAGGTTACGGTTTCCTAGCGGAAAACGCAGACTTTGCTGAAGCGGTAGAAAAAAGCGGCTTTATTTTCATTGGCCCTAAAGCTGAAACTATCAACCTTATGGGTGACAAAGTTTCTGCTATCAACGCCATGAAAAAGGCAGGCGTACCGTGTGTACCCGGTTCCGACGGCCCGCTAACTGACGACGTAGAGCGCAACAAAGCCATTGCTAAGCGCATTGGTTACCCAATCATCGTTAAAGCTGCGGGCGGCGGCGGTGGTCGTGGTATGCGCGTGGTGCGCAGCGAAGCTGAGTTGATTAAAGCCATTGAAACAACGCAAGCGGAAGCTGGTGCTGCATTTGGTAACTCAACGGTTTACATGGAAAAATTCCTTGAGAACCCACGTCACGTTGAAATTCAGGTATTAGCCGATGGCCAAGGTAACGCCATTCACTTAGGTGAGCGTGACTGTTCAATGCAACGTCGCCACCAAAAAGTGGTTGAAGAAGCGCCTGCACCGGGTATTTCTGAGCAAATGCGCACCAAGATTGGCGATCGCTGCCGCAGAGCCTGTATTGAAATTGGCTACCGCGGAGCAGGTACATTCGAGTTCCTATATGAAAACGGCGAATTCTATTTCATTGAAATGAATACCCGTATTCAGGTAGAGCACCCAGTATCTGAAATGATCACAGGCGTTGACCTTATTAAAGAGCAGCTTCGCATTGCAGCCGGTCAGCCACTATCAATTGATCAGTCGCAAATTCAAATTCGTGGCCACGCTATTGAATGTCGAATTAACGCAGAAGATCCACAAACCTTCATTCCTAGCCCTGGTCCTATTGATATGTTCCATGCGCCAGGTGGTTTAGGTATTCGTTGGGAGTCGCATATTTACGCGGGCTACCACGTGCCTCCTTACTACGACTCAATGATTGGTAAGCTTATCACTTATGGTGAAAGCCGCGACGAAGCGATTGCTCGTATGCGCCATGCCCTTGAAGAGATTGTGGTTGAAGGAATTAAAACGAATATCCCTCTTCAGCGCGCAATTATGGCCGATGAAAACTTCTTCGCGGGTGGAACCAACATCCACTACCTAGAGAAGAAGCTAGCCATTGCAGGAACTAACCCGCAGGCAGAACAAATAGCGCCCACCTTCTCACAGAAGCTAGATATTCAGGTTCGTTACGATAATCGTTCCAACCGCCCGAGCCGCGAACAATATCGACTGCGTTACTATCCCTCTCTTGCCATCACTTCTGCGTGGTCAGTAAACAGCTTTGTGGTGACTGGCGATGACTTTTCATCAAGTCACAATACATTCGGCAGCGACAACACTGATTATCTCTACGCAAGGCGACTGTACTTAAGGCATGAAACCGATTCGGGGAAAACTGAGTTAGGCGTTATTCCAACTTACAAAGGGCGTGTTTCTTCCACCGGCTTGTCGAAAGATGGTTGGATAACGGGGGTACGTCATGTGAGGCAATTGCAAAACGACACCGCCATTGAAATAGTCGTTGGTCAACTTGCAAATGCTGAGGCATCTGAAGCCTTTAATATTGGCGGAGAGGATGAGTATTTCGAAATTGAATATTCGGCCAAGATGGGACAACGACATAGCTACGAAGCCAGTTTTGAAAGAATGCTGAACGGTACATTTGCCAGGGCAGAATATCGATTACGTATTAATGAACAAGATACCGCGTTCATTGAATTAGTGCAGCGTACTGATGAAAGTGCTGCGAAAGTTGTAGTGGGCACCAGCGGCGAATTCGCTGCAAGCGCTTTTAACACATCATATCCTATCGAATATTTTGCTTACTATTCCTATATAGACAGTAGTTTTGGTGAGCGCGCTGAATTAATTGAAGACTTCCTAGGAACTGGTCACGGCGGCTCTCTGGAATTTAGTGGCGTGCTATCCGAGAAGCATGATGTTGAATGGTTTATAAGAGCTGATGTGGTAGATAGTGTCAGTCGATTACTGGCAGGAGTAAAACTCTCCTTCGATAGTGTTCTTGTGCCCAGCCGTTACGCTCAGTTCAAAGAAAAACTTCCCATTTCCCGACTCTCCGATGAAGCGCTGCTTGCGTTTCGCTTCCTTTTTGATGATCCTCTCGATATCGTAGACTTAGCGCAAGATATATCTGACTTAACGCTTTACCCGGAACGGCTGAAAGACAGTTATAGAAAGGAGTGGGAAGCCTACGTGCTAAAGGCACTGGCGTTTGAGATCAAACAACATACAGACGTTTCTCCTGCAGAGTTCATTGAGCTTGTCATGAACAAGGTAGAAGCGATTCAGCAAAATAACGACACCTATCAAAATCTATTGCGTCAGGTTCACCACGCTAAGAGTATTCTGCAATCAGAAAACACGGTCGTTTTCCCTACCCCCATGCGTCAGCAGTTAACTGCGTTTCTTTTGCCGATTACTACTATTTCGCCTCCAAAAAAATAA

Transcript

ANN28666-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P24182	Biotin carboxylase OS=Escherichia coli (strain K12) OX=83333 GN=accC PE=1 SV=2
Q8X9B6	Biotin carboxylase OS=Escherichia coli O157:H7 OX=83334 GN=accC PE=3 SV=1
P43873	Biotin carboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=accC PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051602 all species →	Family	Acetyl-CoA Carboxylase Biotin Carboxylase Component	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR004549 all species →	Family	Acetyl-CoA carboxylase, biotin carboxylase	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48095 all species →	PYRUVATE CARBOXYLASE SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN28666-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.