Detailed information of ANN28672-RA in Montipora grisea

Genomic Location: Scaffold_4335__1_contigs__length_32613:8496...9132
NR annotation: NKC00564.1, transcription termination factor Rho [Pseudomonadales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9HTV1Transcription termination factor Rho OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rho PE=3 SV=1
P52155Transcription termination factor Rho OS=Pseudomonas fluorescens biotype C OX=335 GN=rho PE=3 SV=1
P52152Transcription termination factor Rho OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) OX=572477 GN=rho PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07497Rho_RNA_bindRho termination factor, RNA-binding domainDomainInterproscan
PF07498Rho_NRho termination factor, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011113DomainRho termination factor, RNA-binding domainInterproscan
IPR036269Homologous_superfamilyRho termination factor, N-terminal domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR004665FamilyTranscription termination factor RhoInterproscan
IPR011112DomainRho termination factor, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46425TRANSCRIPTION TERMINATION FACTOR RHOInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006353Biological ProcessDNA-templated transcription terminationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0008186Molecular FunctionATP-dependent activity, acting on RNAInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02590nifHD2, nifI2; nitrogen regulatory protein PII 2-Transcription-deepkoala

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