Gene detail

Detailed information of ANN28707-RA in Montipora grisea

Genomic Location: Scaffold_1147__1_contigs__length_61018:52772...56266
NR annotation: KKT23508.1, polymerase III, alpha subunit protein [candidate division TM6 bacterium GW2011_GWF2_43_87]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28707-RA

ATGCCCCATGCACTCGCACACTTAGAACATGTTATTCACAAAAACCTCAAAACAAAGCTCCAGCGTGGTAGTGCCTACTGCACAATCTACTTAAGCTCGCTTGCACCATTAAGCGGCTCTGTACAACCCTCACTAAAAACTGTTGGGGAATATTTAAAATCAGTTAAACAGATCAAAAAAGAATTTGGTGAAAAATATCATCTTGGCACAGAATTAGATATCAAAGATATTTTGAAATTGCCCCATGTCTTTGAACAACCAGAAGAATCACTCAATAAAAAAACAAGTGCTCTCTTAATCCATGAAATTGATATTCTTATTGATGATCTCTGCGCAGAACGCCGCAAAGAAGGTGCAGCATTACGCAAAGATCTCGAACAACGAATCAAAACAATTAAAACCACGTTTACTAAACTAGAGAAACGCACTAAAGTCGCTGTAAAAGAGCGAAAGAAAAAACTCTTAACCAATGCAAAGACCCTCCTAAAAAATGCATCCGATGATGCTAAAGAACATCAAATACAGCTCATCTACAACCAACTTGATAAAATGGGTATCCACGAAGAGATCGTACGGTTCAAGAACCATATCAAAAGTTTTCAAAAATGTATCGAAAATAAAACGACCGAAAAAGATGGAGCAATTAGCCTTGATAAACTCGTTGGTTTTGCAAAAACACACAATCTCCCTGCAATTGGAATCTCTGACCATGGTAACATTTTTGGTGCAGTAAAATTTTTCCAAAAAGCAAAAAAAGCCGGGATTAAGCCTGTTTTGGGAATGGAGGCATATATCACCGGCGATCGCCGTGTAAAAGACAATAAAAACCGTTACTATCATCTTTTACTACTCGTAGAAAACGCTGTTGGCTACCGCAATCTCTGTAAGTTAATTCATCACTCGTACACCGAAGGGTTCTATTTTAAGCCCCGTATCGACTATGAGCTTTTAGAGCGCTACTCTGAAGGACTTATCTCTTCGACCACCTGCTTGGGTGGTCATATTCCCCAACTACTTTTGCAAGAAAATGACACTGAAGCAATAGAAGTGATGGACCGAATGCTCGGTATTTTTGGGGAAAACAACTATTTTGTAGAGGTCCAGCCAGACGACCAACAAGAGCAGAAAATTATCAACGCCAAACTCTTTGAGTTGAGTGTAAAAAAAGGTATCCCATTAATTGGTACCGCCGACAGTCACTACCACTCACCCGAAGACCGTTACGCGCATGAGGTGATGCTTGCAATTCAGACACGTCACAAAATGAGCGACGCGAACCGTATGACATTTGGCGACTGCCGTGCCCATATGCGGACACCAGAGGAGATGGTGAAAGCATTCCCCGGTAAAGAAGATATGCTCTGGCGTACAGGAGAAATTGCAGATCGCTGTAACTTTGAATTTGAGACCGGTAAACTTTTTTTCCCAAAATTCGAAATTCCCAAACAGGAAACGGAAGAGAGCTTTTTTACAAAGCTCTGTAAAGTGGGGCTCCAGAAACTATTTGATACCAAGCGTATTGTAACTGACAGCCCTGAACCCTACTGGGATCGTCTGCAGGTAGAAATTGACCTCATCACTGATATGGGCTTTATCACTTACTTTTTAGTTGTCAGTGATTTTATTCAATGGGCAAAACGGCAAGGCATACCTGTTGGTCCTGGCCGTGGTTCCGCTGCCGGTTCACTGGTTGCATGGGCACTGGAAATTACCGATATCGACCCACTACGCTACAATCTACTTTTTGAGCGTTTCTTAAATCCAGAGCGTGTGACAATGCCCGATATCGATATCGACTTTTGTATCGAGGGACGTGAAAAAGTTATCAACTACGTGCGTGACAAATATGGACACGATAAAGTCTGCCAGATCATCACATTTGGTACCATGATGGCAAAAGGTGTACTTAAAGATGTTGCACGTGCCCTTGGCATGCCATTTGAAGATGCTAACGCCATTACCGATCTGATTCCTGACCAACTCAAAATTTCACTAAAAGAAGCATTTGAACAAGAACCACGTCTGGGTGAACTACGTGACTCTAATCCACAAGCTGCCCAAATATTTGATATTGCATTTCGTCTTGAAGGGCTTACACGCCATGCATCAAAACATGCTGCAGGCCTTGTGATCACGCCACGTCCAATTGATGAAATGCTCCCAATTTATGTACCATCAAAAACAACTGATATTGTAACACAGTACGCTATGAGTGAGTTAGAAGATATTGGTTTTCTCAAAATGGACTTCTTGGGACTAAAAAACCTCACACTTATTCAACGTGTTATTGACCTTGTGAAAAAAAACCATGATGTAACACTTGATCCCAATCATCTACCACTTGATGATGCAAAAACGTTTGAGCTGCTCTCCCGTGGTGACACAACTGGCGTATTCCAGCTCGAGTCGAGTGGCCTAAAAGATGTCTTGAGAAAACTGAAACCCGAATCATTTGAAGATATTATTGCGGTTAACGCACTCTATCGCCCAGGACCACTTGGATCAGGGATGGTCGACGACTTTATCGAACGCCGTCATGGACGCCAAAAAATCACCTACCTTTTTAACGAACTCGAACCAATTTTAAAAGAGACCTACGGCGTTATTGTTTACCAAGAACAGGTAATGAAAATTGCCTCCACTATTGCTCAATATAGCCTTGGTGAAGCGGATATCCTTCGTCGTGCAATGGGTAAGAAAAAAGTTGATGTCATGGCACAGCAGCGTGAACTTTTCACAACGCGTGCAAAAGACAAAGGGTTCGATAGCCGCAAAGCTGGTGAGCTCTTTGACCTTATGGCCTACTTTGCCGGATACGGTTTTAATAAATCACACTCTGCTGCATACGGTATGATCGCTTACCAAACAGCCTACTTCAAAGCACACTATCCTGCTGAGTTTATGGCGTCGCTTATTTCGCTCGAGGCAAAAGACCCAGATAAAATGGCCTTCTACATTCAAGAAGCAAAAGATATGGGTATCGAAGTACTTCCGCCTGATATTAATATGTCAGAGCGTCTTTTTACCACAAACGGCAATACTATTCGTTTTGGTATTCAAGGTATTAAAAATGCAGGCAATACTGCAATTGACATGATTGTTGCGGTACGAAAAAAAGATGGACTATTTAGAGATTTACTCGATTTCTGTGTCCGCGCTGATCTAAGAACCTGTAATAAACGGGTCATCGAAAACTTAATCGCCGCTGGTGCATTTGACAGTTTACCTGGTAACCGTGCACAAAAACTGAAGAGCTGCCACAGGTAA

Transcript

ANN28707-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O67125	DNA polymerase III subunit alpha OS=Aquifex aeolicus (strain VF5) OX=224324 GN=dnaE PE=3 SV=1
O51526	DNA polymerase III subunit alpha OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=dnaE PE=3 SV=2
Q9XDH5	DNA polymerase III subunit alpha OS=Thermus aquaticus OX=271 GN=dnaE PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011882 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03755 all species →	YicC_N	YicC-like family, N-terminal region	Family	Interproscan
PF02811 all species →	PHP	PHP domain	Family	Interproscan
PF17657 all species →	DNA_pol3_finger	Bacterial DNA polymerase III alpha subunit finger domain	Domain	Interproscan
PF07733 all species →	DNA_pol3_alpha	Bacterial DNA polymerase III alpha NTPase domain	Domain	Interproscan
PF14579 all species →	HHH_6	Helix-hairpin-helix motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013527 all species →	Domain	Endoribonuclease YicC-like, N-terminal	Interproscan
IPR004805 all species →	Family	Error-prone DNA polymerase/DNA polymerase III subunit alpha DnaE/PolC	Interproscan
IPR004013 all species →	Domain	PHP domain	Interproscan
IPR003141 all species →	Domain	Polymerase/histidinol phosphatase, N-terminal	Interproscan
IPR041931 all species →	Homologous_superfamily	Bacterial DNA polymerase III alpha subunit, thumb domain	Interproscan
IPR040982 all species →	Domain	DNA polymerase III alpha subunit finger domain	Interproscan
IPR011708 all species →	Domain	Bacterial DNA polymerase III, alpha subunit, NTPase domain	Interproscan
IPR016195 all species →	Homologous_superfamily	Polymerase/histidinol phosphatase-like	Interproscan
IPR029460 all species →	Domain	DNA polymerase, helix-hairpin-helix motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32294 all species →	DNA POLYMERASE III SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN28707-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.