Gene detail

Detailed information of ANN28711-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:9311152...9314680
NR annotation: XP_033756226.1, uncharacterized protein K02A2.6-like [Pecten maximus]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28711-RA

ATGCTGAAACTCGACCCGCCGGAGAAACTTGACTTCACAAAGCCCCAAGAGTGGCTGGAGTGGAAGCAGCGATTCGAGCGATTTAGGTGCGCTACGAAACTTAGCGAGGAAGATGAAGTTCTTCAGATAAATGCCCTTATCTACACTCTGGGGAAAGAGGCAGAAAATATATTCAAAGCGTTTACATTCACGGGTGGCAACGAAATGAAGTATGCCAAGGTTATCGAGAAATTCGACGAGCATTTTGTACCGAAGAGAAATGTCATTCACGAGCGAGCATGTTTTCATCGACTTGTTCAAAAAGAAGGAGAAACCGTGGAAGCTTTCGTCCGAAATCTCTACGAGTTGGCACAACATTGTGAATTTGGAACACAGAGAGATGAGCAAATCAGAGACAGGATTGTTATTGGAATTCTTGACAAATCACTATCGCAAAAGCTTCAAATGAAATCGGATCTCAATCTCGGCACGGCGATACAAATGGCGCGTCAGTCCGAACTAGTAAAATTTCAGGTTGCGGGCCAGTCCGATGGTAAGCATTTGGGAGAAGTACACCAAAAGAAAAGCAAACCGAATCCAGTAAGAAGACCAGCCCGTAAGGACCGTAACGTGCGTGATAAGAATCCTAAGAACGTTCCGATAGTTCACCCTTGTTCTCGATGTAATCGCATACACAAACAAGATGAAACTTGCCCAGCGACTGGGAAGCGATGCTCTAAATGTCAGAAAAAGGGCCATTTTGTTGTTGTGTGCCGCTCTGTGAGAGAGGTAGTGTTCAATTCGGGAGGGATTGATCAGCAATTTTTCCTTGGCGCTGTAAGTTCATGCGATAAGTTCGAAGAGCCGTGGAGTGTTGTGTTACACATCAACCGGAAACCTGTACAGTTTAAGATTGATACAGGAGCCGACATCTCTGTAATCTCAGACTCGACCTATCAATCCCTAACTCCGCGTCCAAAGCTGAAGCCTTCAAATGCCATGCTGTCCAGTCCAGGTGGGACGCTGAATTGTAAAGGCCAATTTACAGCAGAAATTTCCCTTAAGGACGAACAGCACTTTGTTGATATTTATGTTATTGAAGGATCATGTGTAAACAACCTACTCAGTCGTCACGCCGTATGCCAGATGGGTCTAGTCCAGCGCATCGAAGAAATTACTGCTAACGCGTTTGGTGACATTGGTCTAATGAACTGTGAGCCAGTTAAGATTGAGCTCACCGACAATGCAAAGCCGTATTGTGTCAACTCTGCGAGAAAGATTCCATTTCCTTTACTTCCCAAAGTGAAAGAGGAGCTCGAGCGCATGTTGCAAGAAGGAATCATTGAGGAAGTTAACGAACCGACCGACTGGTGTGCTCCTATGGTTCCTGTTGTTAAAACCAACGGTAAAGTCAGAATTTGCGTCGACCTGCGGAGATTAAATGAAGCCGTTAAAAGACAAAGATACATTCTTCCGACCTTAGAAGATGTTGCTCCGAAACTGGCTGGAGCCGAAGTATTTTCAAAACTGGATGCATCTAGCGGTTATTGGCAAATACCTTTACACCCAGAAAGCTCAAGGTTAACCACCTTCATCACTCCCAGTGGCCGTTTCTGTTTCCGCCGTTTGCCATTCGGGATAACCTCTGCACCAGACATTTTCCAGAAAAGAATGACCAACCTTCTAAATGACCAAGAAGGTGTGGCAGCTATCCAGGACGACATTATTGTCTATGGTAGAACTGTCGAAGAGCATGATGCAAGACTTCAGAAAGTGTTTGTAACCATTGCAAAGTCTGGACTTAAGCTGAATGAGAAGAAGTGCGAAATCCGCAAGCCAAAGATATGCTACTTCGGAAATGTCATAAGCGGAGAGGAAGTCAGCCCAGATGCAGACAAAGTTAGAGCTATTCAGGAACTTCCAGCACCAAAGAATGTACCTGAATTGCGTCCGGTGCTCGGAATGATTAACTATCTGGGAAAATTCCTGCCAAACCTGTCAGATGTGATTAGCCCAATGACGCCTGTACTAGCATTCTACGACGTAAAGAAACCGACAGTGGTCTCTGCAGACGCCAGCAACTATGGGTTAGGTGGTGTCCTCCTACAGAAGCATGGTGAACAACTACGTCCTGTCGCATTCACCTCCCGTACCCTTACTCATGCAGAGAAGAGGTATGCTCAGATCGAGAAAGAGTGCTTAGCGTCAGTATGGACATGTGAGAAGTTTTCCCGCTACCTATGTGCTCTTGAGTCGTTCCAACTGATAACAGACCACAAGCCGTTGGTACCACTGTTTAATCATGAAGACCTTGATCGAGTACCCTTAAGGTGTCAGCGTCTTCTTATGCGCATGATGAGATTCAGGGCAAAGACTCAACATGTGCCTGGAAAGCAACTAGTGGTGGCTGATACGCTTTCAAGAAATCCCCTCTCTGTCCCATCCGAGACATCTGACACAGAAGAAGAAGTCAGAGCCTACGTGGATGCAGCAGAAATGGTACGACCAGCATCACCTGAGAAGATGGAAAGGATCAAAGAAGCTACTTTTTCTGATCCTCAGCTGAGTCGTGTTCTAAATTATACTGCTAATGGTTGGCCAAAGTACGCTTCGGATGTGCCAGAAGAAATCCGTCCTTATCATGCGGTGCGCGGTGATCTTTCAGTAACAGACGGCAAGGTAATCTATCGAAACCGCCTTGTTATACCTCCTTTCCTACAGTCTGAGGTGTTGGAACGCATCCATGATGGCCACCAGGGCATAACCAAGTGTCGTGAAAGAGCTAATTTGTCAGTTTGGTGGCCTGGCATTGGTCGCGACATCCAGAACAAAGTTTCAATGTGTGACTTTTGTCAAGAGAACTTACCTACTCAGAGAAAGGAACCACTTATCACTACACCTCTCCCAGAAAGAGCGTGGAAGAAGATTGGCACAGACTTATGCGAACACGAAGGAAAGCAGTTCCTAGTGGTTATTGATTATTATTCGAGATTTCCTGAGATAGCTTTCATGTCCAGCACCACCAGCGATGCCGTGATCAATAAGCTTAAGGACTTATTTGCCCGATGGGAAGTACCAGACGAAATTGTCAGTGACAATGGTCCACAATTCTCCTCTGATCAGTTCCGCAAGTTTAGCCAAGAATATGACTTCAAGCATACTACCACTAGTCCATATCATCCACAAGCAAATGGTCAATTGGAAAGTGGAGTTCGCATTGGCAAGAAGATATTAAGACAGCGTGATCCCTTTCTTGCACTTATGTCATATAGAGCTACACCTCATACAGCCATTGGTGTAAGCCTTTGCCAGCTTACGATGGGAAGAGAAATTCGCACACTTCTACCTACTTTAGAATCCAACCTAAGGCCAGTTTTACAAAGCCAGGAAGCAGTTACCAGGAAGGATGAGGAATCGAAAGCTGCCTACCGTCAGTACTTTGATCAGAGACATGGAGTGTGA

Transcript

ANN28711-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q91DM0	Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) OX=492094 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00077 all species →	RVP	Retroviral aspartyl protease	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR018061 all species →	Domain	Retropepsins	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN28711-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.