Genomic Location: Scaffold_3075__1_contigs__length_38338:18623...19943
NR annotation: MCR9269548.1, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Hyphomonadaceae bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN28752-RA |
| Transcript |
| ANN28752-RA |
| Protein |
| ANN28752-RA |
| UniProt accession | Description |
|---|---|
| Q9R9N3 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rhizobium meliloti (strain 1021) OX=266834 GN=pdhC PE=3 SV=1 |
| Q1RJT3 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=pdhC PE=3 SV=1 |
| Q4ULG1 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=pdhC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001901 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02817 all species → | E3_binding | e3 binding domain | Family | Interproscan |
| PF00364 all species → | Biotin_lipoyl | Biotin-requiring enzyme | Domain | Interproscan |
| PF00198 all species → | 2-oxoacid_dh | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023213 all species → | Homologous_superfamily | Chloramphenicol acetyltransferase-like domain superfamily | Interproscan |
| IPR004167 all species → | Domain | Peripheral subunit-binding domain | Interproscan |
| IPR003016 all species → | Binding_site | 2-oxo acid dehydrogenase, lipoyl-binding site | Interproscan |
| IPR036625 all species → | Homologous_superfamily | E3-binding domain superfamily | Interproscan |
| IPR006257 all species → | Family | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | Interproscan |
| IPR045257 all species → | Family | Dihydrolipoamide acetyltransferase/Pyruvate dehydrogenase protein X component | Interproscan |
| IPR000089 all species → | Domain | Biotin/lipoyl attachment | Interproscan |
| IPR001078 all species → | Domain | 2-oxoacid dehydrogenase acyltransferase, catalytic domain | Interproscan |
| IPR011053 all species → | Homologous_superfamily | Single hybrid motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23151 all species → | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016746 all species → | Molecular Function | acyltransferase activity | Interproscan |
| GO:0004742 all species → | Molecular Function | dihydrolipoyllysine-residue acetyltransferase activity | Interproscan |
| GO:0006090 all species → | Biological Process | pyruvate metabolic process | Interproscan |
| GO:0045254 all species → | Cellular Component | pyruvate dehydrogenase complex | Interproscan |
| GO:0005967 all species → | Cellular Component | obsolete mitochondrial pyruvate dehydrogenase complex | Interproscan |
| GO:0006086 all species → | Biological Process | acetyl-CoA biosynthetic process from pyruvate | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00627 | DLAT, aceF, pdhC; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) | EC:2.3.1.12 | Lipoic acid metabolism | ko00785 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
