Detailed information of ANN28780-RA in Montipora grisea

Genomic Location: Scaffold_79__1_contigs__length_335549:269978...271761
NR annotation: MXX41068.1, tryptophan--tRNA ligase [Gemmatimonadota bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7VIP6Tryptophan--tRNA ligase OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) OX=235279 GN=trpS PE=3 SV=1
Q7MAE0Tryptophan--tRNA ligase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W) OX=273121 GN=trpS PE=3 SV=1
P56396Tryptophan--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 GN=trpS PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004173 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00218
all species →		IGPSIndole-3-glycerol phosphate synthaseDomainInterproscan
PF00579
all species →		tRNA-synt_1btRNA synthetases class I (W and Y)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002306
all species →		FamilyTryptophan-tRNA ligaseInterproscan
IPR013798
all species →		DomainIndole-3-glycerol phosphate synthase domainInterproscan
IPR050203
all species →		FamilyTryptophan--tRNA ligaseInterproscan
IPR001468
all species →		Conserved_siteIndole-3-glycerol phosphate synthase, conserved siteInterproscan
IPR001412
all species →		Conserved_siteAminoacyl-tRNA synthetase, class I, conserved siteInterproscan
IPR013785
all species →		Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR011060
all species →		Homologous_superfamilyRibulose-phosphate binding barrelInterproscan
IPR002305
all species →		FamilyAminoacyl-tRNA synthetase, class IcInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR024109
all species →		FamilyTryptophan-tRNA ligase, bacterial-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43766
all species →		TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIALInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004830
all species →		Molecular Functiontryptophan-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006436
all species →		Biological Processtryptophanyl-tRNA aminoacylationInterproscan
GO:0004425
all species →		Molecular Functionindole-3-glycerol-phosphate synthase activityInterproscan
GO:0006568
all species →		Biological Processtryptophan metabolic processInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN28780-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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