Gene detail

Detailed information of ANN28798-RA in Montipora grisea

Genomic Location: Scaffold_2534__1_contigs__length_42012:18321...19892
NR annotation: MBL4804760.1, GTPase HflX [Alphaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A0L4B2	GTPase HflX OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=hflX PE=3 SV=1
P25519	GTPase HflX OS=Escherichia coli (strain K12) OX=83333 GN=hflX PE=1 SV=3
C1F407	GTPase HflX OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / BCRC 80197 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161) OX=240015 GN=hflX PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF19275	HflX_C	HflX C-terminal domain	Domain	Interproscan
PF17209	Hfq	Hfq protein	Domain	Interproscan
PF16360	GTP-bdg_M	GTP-binding GTPase Middle Region	Family	Interproscan
PF13167	GTP-bdg_N	GTP-binding GTPase N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047575	Domain	Sm domain	Interproscan
IPR016496	Family	GTPase HflX	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR005001	Family	RNA-binding protein Hfq	Interproscan
IPR045498	Domain	HflX, C-terminal domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030394	Domain	HflX-type guanine nucleotide-binding (G) domain	Interproscan
IPR032305	Domain	GTP-binding protein, middle domain	Interproscan
IPR042108	Homologous_superfamily	GTPase HflX, N-terminal domain superfamily	Interproscan
IPR025121	Domain	GTPase HflX, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10229	GTP-BINDING PROTEIN HFLX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03665	hflX; GTPase	-	Ribosome biogenesis	ko03009	deepkoala