Gene detail

Detailed information of ANN28808-RA in Montipora grisea

Genomic Location: Scaffold_9145__1_contigs__length_20428:18552...20311
NR annotation: MBA4782353.1, DNA repair protein RadA [Hyphomicrobiales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2YMH5	DNA repair protein RadA OS=Brucella abortus (strain 2308) OX=359391 GN=radA PE=3 SV=1
Q4UL56	DNA repair protein RadA OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=radA PE=3 SV=1
Q1RJR7	DNA repair protein RadA OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=radA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013893 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13481 all species →	AAA_25	AAA domain	Domain	Interproscan
PF18073 all species →	Rubredoxin_2	Rubredoxin metal binding domain	Domain	Interproscan
PF00842 all species →	Ala_racemase_C	Alanine racemase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011079 all species →	Domain	Alanine racemase, C-terminal	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR004504 all species →	Family	DNA repair protein RadA	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR020588 all species →	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR041166 all species →	Domain	LapB, rubredoxin metal binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32472 all species →	DNA REPAIR PROTEIN RADA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0000725 all species →	Biological Process	recombinational repair	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN28808-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.