Gene detail

Detailed information of ANN28843-RA in Montipora grisea

Genomic Location: Scaffold_158__1_contigs__length_178343:12517...14598
NR annotation: MCH1550165.1, carboxy terminal-processing peptidase [Pseudomonadales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28843-RA

ATGCGTCGCATCTCTTTCTTCCTCTTAGTCTTGTCTGCCGGGCTAACTCCCCCTTTAACTGCCAGCCAGCTCGATGAAACGACTTTTGACTTTGAAGAAATCGAGCCGTTGCCAGTGCACGAGAGAACCAACAAGAACATCGTGGATCAAGTCCGGGCACATCATCTCCGGGACAAGCCGCTAGACGACAATGCTTCGAGTCGAATCTTTGACAAATATCTCGAAGTTCTGGACTTCAACAGAAGAGTCTTTTACCAAACCGACATTGAGGAATTTGAGAAGTATCGCTTCGAACTCGACGATGCGCTCAAGAACGGCGATCTCGAGCCTGCTTTCGATATTTTTAATCGTTCGCAGATTCGGCGTATCCAACGTCTAAAGTACGTACTACAACGACTCGAAGACGGCATCGGCACGTTCGATTTAAATACGGATGAACGCATACCGTTAGATCCGGAGCACGAACGCTGGCCTGCCAATGCGCAACACGCTGCGAAACTTTGGGACATATCACTCACCGATCAGATTATCCGCTACCAGCTAAACGGCAAGAAGGACAATGAAATTGCGGATACGCTTCGAAAGAGCTATGACCGGCTGTTGAAGAATGCCCTGAAGACGAACAACGAAGACGTTTTTCGTCTCTACATGAATGCGTTCAGCACAACATACGACCCGCACACAAACTACTTCCCACCGATCGATTCGGATAATTTCCACATACCAATGTCGTTGAAATTGGAGGGAATCGGCGCTGAACTTCGGACCGTAGACGATTACGTCCAGGTTGTGCGGCTTCTCCCAGGCGGTCCCGCCGCTCTCGATGGCCAACTCCACGCGACAGATCGTATCGTTGGCGTTGGGCTGGCGGTGGACAAACCTATTACCAATGTGATCGGCTGGCGTCTGGATGACGTCGTCGACATGATTCGAGGACCCAAAGGCACCGTCGTCGTGCTTGAGATCCTCCGCGACGATGAGTCGACCAAAACCATAGCCATCACTCGAGATACGGTTGATATAGAGGAAGGAGCCGCAAAGAAGGAAATTCTATCGCTTAATTACCAAGGACACGAGCGCAAGATCGGCGTTATTACCATACCAGCCTTTTACTTTGATTTCCTAGCTCAGCAACGAAAGCTAGCTGATTATCGGCGCGTCTCTAAGGACGTGAAAAACCTCATTAACGAATTGAAAGCAGATAACGTCGATGGGTTGGTTATCGATTTACGAAACAATGGCGGTGGGTCGTTGGACGAAGCAAATGTAGTAACGGGATTTTTTATTGAAACCGGACCGATTGTCCAAACAAAGTTCCATAGGCGCCCGCCGCGGATAACTCAGGACCGCAATCCAGCGATCGAATGGGAAGGACCTCTGGCGGTTCTTGTGAACCGGCGGTCAGCGTCGGCGAGCGAAATTTTCGCTAGTGCAATCCAAGATCATGGACGCGGCATCATCTTAGGCTCGCAGACATTTGGCAAAGGGACAGTTCAAACGATAATACCTTTGAATCGAGGTCAACTGAAAGTGACTCAAGGAAAGTTCTATCGAATCTCTGGAAAAAGCACTCAACTTGCCGGCGTCACGCCCGACATCGAGTTTCCTGATTTATTAGGAGGCAAGTACATTGGCGAACATTCGTATAAAGATCCGCTACCAGAGGACGAAGAGAAACCAGCTAACTACTCGCCAGTCAGCGATATTGAACTCATTAAAGATCAGCTCGTCGATAGACATGCCGAGCGCATTAAGGAGAATCCCTACTTCGACTATTTCAAAGCTATTGAGCAACGACGTGTAGAGAACTATGCTCGCACGCACCGGTCGGTAAACAAGGAATTGCGTGCCCAAGCGCGTACCGAAGAAGACGATTGGCGCTTAACAACAATCAACGATCTACGTGAGGCGACTGGCAAGGAGCCGGTAGCCACGGTTGATGAGCTGGATGAACGTATCGGTGTGCCTGAGACTGACGCGATGCTTGAAGAAGCTGGCTTCATTTTACTTGACTACATGAATCTTGGTGCGCCGCTGGCTATGGCCGATGAATTGACGTCTGCTCCAATTGTACCTCAATGA

Transcript

ANN28843-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43669	Tail-specific protease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=prc PE=3 SV=2
P23865	Tail-specific protease OS=Escherichia coli (strain K12) OX=83333 GN=prc PE=1 SV=2
P45306	Tail-specific protease OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=prc PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0015389 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF17804 all species →	TSP_NTD	Tail specific protease N-terminal domain	Domain	Interproscan
PF03572 all species →	Peptidase_S41	Peptidase family S41	Family	Interproscan
PF11818 all species →	DUF3340	C-terminal domain of tail specific protease (DUF3340)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR004447 all species →	Family	C-terminal-processing peptidase S41A	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR005151 all species →	Domain	Tail specific protease	Interproscan
IPR040573 all species →	Domain	Tail specific protease, N-terminal domain	Interproscan
IPR020992 all species →	Domain	Tail specific protease, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32060 all species →	TAIL-SPECIFIC PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0004175 all species →	Molecular Function	endopeptidase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0030288 all species →	Cellular Component	outer membrane-bounded periplasmic space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03797	E3.4.21.102, prc, ctpA; carboxyl-terminal processing protease	EC:3.4.21.102	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.