Gene detail

Detailed information of ANN28851-RA in Montipora grisea

Genomic Location: Scaffold_1555__1_contigs__length_53430:6711...10232
NR annotation: NIP29364.1, carbamoyl-phosphate synthase large subunit [Candidatus Dadabacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN28851-RA

ATGACCGATTCCGAAACTGCTGATAGAACGTATATTGAACCCTTAACCCCAGAGATTGTTGAGAGCGTAATTGAAAAGGAAAGACCTGACGCATTACTCCCCACTCTAGGTGGACAAACGGCTTTGAATTTAGCTGTGGAGTTGGCAGAGAACGGAGTGTTGGAAAGGTACGGAGTTGAGCTTATCGGTGCGAAGCTGGACGCTATTAAAAAAGCCGAAAATAGGGAGTTGTTTAAAAAAACTATCAGTGAAATAGGACTTGATGTTCCTAAAAGCGGTATAGCTCATAACATTACGGAGGCTTGGGAAGTTGTAGAAGAGGTTGGATTTCCTGTGATTATCAGACCTTCATTTACTCTCGGAGGTACGGGTGGAAGTGTTGCATATAATAAGGAAGAGTTTGAAGAGTTTGCAAAATCGGGAATAGACCTCAGTCCCGTAGATGAGATATTGATTGAAGAGTCGGTTATCGGTTGGAAAGAGTTTGAGTTTGAGGTTATGAGGGACGGAAGGGATAATGTCGTCATAATCTGTTCAATTGAGAACTTTGACCCGATGGGCGTTCACACCGGGGACAGTATAACGGTTGCACCCGCTCAAACATTAACCGATAAAGAGTATCAAAAAATGAGGGATGCGTCTTTGAAGATTATTAGGGAAATAGGGGTGGACACGGGCGGCTCCAATATACAGTTTGCAGTAAATCCGCAAAACGGTCACATGATTGTTATTGAGATGAATCCCCGAGTTTCCAGAAGTTCCGCCTTAGCTTCAAAAGCTACAGGTTTTCCAATAGCTAAAATTGCGGCTAAATTAGCTGTAGGCTACACTCTGGATGAGATTGCAAATGATATTACGAGGTACACACCGGCATCGTTTGAACCTACTATTGATTATGTAGTTGTAAAAATCCCCAGATTTGATTTTGAAAAGTTTCCTCAGACAAACTCCACTCTTACAACTCAGATGAAGTCTGTAGGTGAAGTTATGTCCATAGGGCGAACATTTAAGGAGGCTCTGCACAAGGCGATAAGGTCATTGGAGATAGATTATTACGGTTTTGAAAGCAGTGCGGAGAATTTAGATGAGATAAAGTCAAAGTTAAGGGTTCCTTGTGCCGAAAGGTTATGGTATCTGGCAGACGGGTTTAGGTGTGACCTAGATATTGAAGAGGTTCATTCACTAACAAAAATAGATCCCTGGTTTCTTTACAATGTGAAACAGATAGTTGATTTTGAACGAGGTCTTGATAGTAAGAATTATGACGGAAGTTTAATTAAGAATGCAAAACGGTTGGGATTTTCCGATGTAAGAATTTCCGAGCTTTTAGGTGCGGAGGAGAGTGAAATCAGAAAATTTAGATATGATAATGGTATAGAGGCGACATTTAAAATTGTTGATACTTGTGCGGCGGAATTTGAAGCCTATACTCCATATCTTTATTCGTGTTATGAGAGAGAAAGTGAGTTTCCACCAACAGATAAGCGGAAAGTTGTAATTCTCGGCGGAGGACCGAATAGGATAGGGCAGGGAATTGAATTTGATTATTGCTGCGTGCACGCTTCTTTTGCTCTAAACGAGGAGGGTTATGAAGCAATTATGGTTAATTGCAACCCTGAAACTGTGAGTACCGATTATGATACATCAGATAGGTTATATTTTGAGCCACTTACTTTGGAAGATACCTTATCAATCATAAGAAGAGAGAAGCCGGACGGTGTAATTGTGCATTTGGGGGGACAAACTCCGCTTAAACTCGCAATTCCTCTTGAAAGGGAAGGGGTTAATGTTATAGGAACCTCGCCTGAGAGCATTGATTTAGCGGAGGATAGAGAGAGGTTTAGAGATTTAATCTTAAAGCTAGGTTTAAAACAGCCCGAAAGCGGTATTGCTAGAAGCGAGGGAGAAGCGTTAAAAATAGCGCGAGAAATTGGCTATCCTGTAGTTGTTAGACCATCTTATGTTTTGGGTGGACGAGCAATGGAAATAGTTTACGATGAGAACTCGTTGGTAAACTACATAAAGGAAGCCGTAAGTGTTTCGCCGAACCGTCCGATTTTAATTGATAAATTCCTCAAAGACACAAAAGAGGTTGATGTGGACGCTGTTTGCGACGGTGAAACGGTTGTTATAGGCGGTGTGCTTGAGCATATTGAAGAGGCGGGCGTGCATTCGGGCGACAGTGCAATGATTTTGCCCCCGTTTTCCATCAAAGAGAGTTTAATAGAGGAGATTAAAAGACAGACCAAAGAGCTTGCCTTAGCTTTGAATGTAAAGGGGCTAGTGAATATACAGTTTGCGATAAAAGATGAAACTGTATATTTAATCGAGGTTAATCCTAGAGCTAGTAGGACGGTTCCTTTCATAAGCAAGGCGATAGGTGTTCAGTTAGCTAAAATTGGCACGAAGATAATGATTGGTAAAACTTTAGACGAGCTTGGATTTACTGAAGAAATTGTTCCGAAATATTATTGTGTTAAGGAGTCGGTATTTCCTTTCGTTAAGTTCCCAGGGGTTGATACCATATTGGGTCCGGAAATGAAGTCAACAGGCGAAGTGATGGGTATTGACACGGATATAAACAAAGCGTTTGCAAAATCCCAGCTCGCCGCCGGAAACAAACTGCCTTTAGAGGGAACGGCTTTTGTGAGTGTTAAAGATGAAGATAAATCTAAATTAATAGTAAATATTGCTAAAAAACTCGAAGAGTTGGGATTTAATATGTCGGTAGAAAGAGTTCCTATTACACCTAAAGGATATAAGAAATTGCAAGAGGAGTTGAATAGGCTTATAACTGTGGATAGGCCAGAAGTGATTAAGGCAATAGAGTATGCAAGGTCGCTCGGGGACCTTTCCGAGAATGCGGAATATGAGACAGCTAAACAAAAGCAGTCGTTTGTAGAAGGGCGCATACGGGAATTGGAAAGTAAGATCGGAAGAGCAGAGATAATTGACCCTAAAAAAATTGCAAATAAGCAAAGGGTAGTTTTCGGGCTAACGGTTACTATTGAAGATTCTGAGTCAGGTGAAATTAGAAAATATCAGTTAGTGGGAGTGGATGAGTCCGAGCCCGAGAGGGGTAAAATTTCAATAACCTCGCCCATAGGAAGAGCGCTAATAGGAAAACTGATAGATGATGTCGTTGAAGTGAGAACCCCGGGGGGATTGAGAGAGTTTGTAATATTGGATATAGAGTAA

Transcript

ANN28851-RA

Protein

Uniprot

Uniprot term	Description
O28994	Carbamoyl phosphate synthase large chain OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=carB PE=3 SV=1
Q1D6Y8	Carbamoyl phosphate synthase large chain OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=carB PE=3 SV=1
Q8DEM2	Carbamoyl phosphate synthase large chain OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=carB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01272	GreA_GreB	Transcription elongation factor, GreA/GreB, C-term	Domain	Interproscan
PF02787	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF03449	GreA_GreB_N	Transcription elongation factor, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR036805	Homologous_superfamily	Transcription elongation factor, GreA/GreB, N-terminal domain superfamily	Interproscan
IPR028624	Family	Transcription elongation factor GreA/GreB	Interproscan
IPR005483	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR001437	Domain	Transcription elongation factor, GreA/GreB, C-terminal	Interproscan
IPR018151	Conserved_site	Transcription elongation factor, GreA/GreB, conserved site	Interproscan
IPR036897	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR005480	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR006275	Family	Carbamoyl-phosphate synthase, large subunit	Interproscan
IPR036953	Homologous_superfamily	Transcription elongation factor GreA/GreB, C-terminal domain superfamily	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR016185	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR022691	Domain	Transcription elongation factor, GreA/GreB, N-terminal	Interproscan
IPR006359	Family	Transcription elongation factor GreA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0032784	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0070063	Molecular Function	RNA polymerase binding	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006541	Biological Process	glutamine metabolic process	Interproscan