Gene detail

Detailed information of ANN28867-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:13128421...13137452
NR annotation: CAH3176174.1, unnamed protein product, partial [Porites evermanni]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN28867-RA

ATGGTTATTTCCTTGCATGACATTGATGAGCCATTCCCCTATGTATTTTACAACCAAAATTACAAACGTTACATGTCGTCTTACATTGGGAATTACGAAAAATACGATACACATCACGTCAAGAACGTGCGACAAAGAATCAATCTGTTGGAATTAGTAGAAAAGCCGTATGTGAACCTTAGTAGTTATTACCACTCTCTTGGTGATTTCCAGATCGCTTTCAAGTACCATAAGCAAGCCCGTAGTATCACCAAAGAATTTGAAAGCAAAGGTTCGGAAGGAACGTCATACATGAACCGTGGTATTGCTTGCCATCGCCTCGGTGAATTCGAGAAGGCTATCGAGTTCCATCAGCAAGCTCTTAGTATCATGAAAGAAGTTGGGAACAAAGATTCAGAAGGACGCGTATATAAGAACCTCGGTAATGCTTACTGCCATCTTGGTGATTTCAAGACAGCTATCAAGTTCCATCAGCAAGCTCTTGGTATCATGAAAGAAGTTGGAAACAAAGATTCAGAAGGAGGCGTATATATGAACCTCGGTAATGCTTACTACTCTCTTGGTGATTTCAAGACAGCTATCAAGTTCCATCAGCAAGCTCTTAGTATCATGAAAGAAGTTGGGAACAAAGCTTCAGAAGGAATCGTATATAGGAACCTCGGTAATGCTTACCACTCTCTTGGTGATTTCAAGACAGCTATCAAGTTCCATCAGCAAGCTCTTAGTATCATGAAAGAAGTTGGGAACAAAGCTTCAGAAGGAGGCGTATATATGAACCTCGGTACTACTTACGACTCTCTTGGTGATTTCAAGACAGCTATCAAGTTCCATAAGCAAGCTCTTAGTATCATGAAAGAAGTTGGGAACAAAGATTCAGAAGGAACTACATACGGTGCGCTTGGTTGTGATTACTTGTCTAAAGCAGATTATGAGAAAGCTACCAAGTGTTTTCAGCGAGCTCTTAATATCGCCAAAGAAGTTGGAAACAAGCCCTCAGAGGGACTTCTGTATTTGAGGCTTGGTTCTCTTTATTTATCTCTTGGTAACCTTAAGGCAAGTTTGGAGTTATATCAGCAAGGTCTTAGGATCGTTAAAGAAATTGGTAGCAAAGATTTAGAAGGAAAGGCTTATAAGAGCATTGGAACTGTTTATTTATGGTGGAGAGATTTCAATAGAGCTATCGAGTACCATCGGAAAGCTCTAAGTATCGCTAAAGAAACTGGAGACAAAATGGCCGAAGCAACGGCATACGAGGGTCTTGGTAATGATCATCTCTTTCTCGGCGATGTTTGTACAGCTGAAGATTTTTATAAATGTAGTGCACGATTATTTGATGAACTTAGGGGTCTTCTTCAATCGAATGACAGATGGAAAATCGACTTCCGGAACCAATATAAGGCTTCCTACATCAACTTATGGCTTGTTCAGTTACAACAGAACAAGACGGTGGAGGCGCTTTTTACAGCTGAGCGTGGACGTGCACAGGCTCTGATGGACCTTATGGAATCACAGTACGGCGTAAAATCAGTTCGTCCAGTATCTACTGAGAAAACGAGTATAATCTCTTCCATTCAAAGCCACCTTCCATCGCAAACAATATTTTTGGCTGAAGCTTTCAGTTCACTCAACTTCTGGGTGCTGCAAAAAGGAAGTCTTTGTCAGTTTGAGAAAAAGGAAATCAGTGATAGTTTGGAGTCTCTGACTCACAAAACATACAAACAGATTGGAGTCTTTAAAAAAGTCATGTGTGAGAATCGCTCCTTGGATGGGCCAGCAGATGAAGAATCTGAAGAGTTTCCTTATCGAAATCGCGATGAAAAATCAAAGGCATCTGCAGAAGGCGAAGGCGATGCTTTAAAGGCGTTGTCCGATGTGGTCCTGGGACCGATTTCACATCTGCTACAAAGCGATGAAGTTATCATTGTTCCTGATGGTCCACTATATTTGGTTCCCTATGCTGCACTTCTGGACCAACATTCTAGGTACTTGTCTGAAACGCTCACAATTCGACTGGTTCCTACACTGACAAGTTTGAAGCTAATGACAGATTTCCCTGACGGGTACCACAGTACGTCTGGTGCACTGCTTGTTGGTGATCCATGGATGGAAGGTATCCTTTACGAAGGACGTAGAATCCGGGAGCTTCCGGCTGCCAAAGAGGAGGTGGAAATGATCGGTGCTATTCTGAACATCAAACCTCTGACTGGAAAAGAGGCAACAAAAGCTGAAGTGTTGAGCAGGCTAAACTCAGTGGCCTTGGTACACATTGCAGCCCATGGCCGTGCGGAAACTGGTGAAATTTTCTTGTCTCCTAATCCAACGGTGGAAAAGAAAAAACTCAAACAGAAAGACTTCCTTTTGACTATGGCTGATGTGTTAAATGCCAAACTGCGAGCAAGATTGGTTGTCCTAAGCTGCTGCCATAGCGGCCGAGGGAAGATTAAGGCCGAGGGTGTGGTGGGTCTTGCGCGTGCCTTTTTGGGTGCCGGTGCTCGTTCTGTCCTTGCATCACTGTGGGCCGTTAGTGACGAAGCCACTCTGCAGTTTATGAGATACTTCTACGAGCATTTGGCGGAAGGACAACGTGCCAGTAAGGCTCTCCACCAGACCATGAAACAACTGCGGGAATCTGGCAACTTCAGTGACATTAAACACTGGGCTCCGTTTGTGCTGATCGGTGATGACGTAACATTGAATTTTGGTCACTTGAGTAATGTTTCAGATGACCCAGAAAGAACTTTCGACGATGCTCGCCAAATGTGGATTGATAGTAAGGTGACCTCAGGATCTGGTCCACCAGGGGAAAGCACAGGGATCTTAGGAAACCGGGAAAAGTTCATGGAAGGTTTACTGGTGCCCAGTACATCAAGCCAGCAAAGAGCAGCAGTAAAAAAGAGTTCTGACGCGTTGCCTGGTTATCTACAGTATCTGAAAGAAGAACACAAATTGAGCATCTCCGGCGTAGAGGTGGACAGCTCCTCCGAAGAGAAGTCGTCGGAATCTCCAGGTAATTAA

Transcript

ANN28867-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80XJ3	Tetratricopeptide repeat protein 28 OS=Mus musculus OX=10090 GN=Ttc28 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000014 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF17874 all species →	TPR_MalT	MalT-like TPR region	Repeat	Interproscan
PF12770 all species →	CHAT	CHAT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR024983 all species →	Domain	CHAT domain	Interproscan
IPR052699 all species →	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098 all species →	RAPSYN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15837	GPSM2; G-protein signaling modulator 2	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.