Gene detail

Detailed information of ANN28876-RA in Montipora grisea

Genomic Location: Scaffold_3079__1_contigs__length_38297:28837...30171
NR annotation: MBT8433773.1, sigma-54 dependent transcriptional regulator [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q00934	Response regulator protein PilR OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=pilR PE=1 SV=2
Q06065	Regulatory protein AtoC OS=Escherichia coli (strain K12) OX=83333 GN=atoC PE=1 SV=2
P14375	Transcriptional regulatory protein ZraR OS=Escherichia coli (strain K12) OX=83333 GN=zraR PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02954	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF00158	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF00072	Response_reg	Response regulator receiver domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025662	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR025943	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR011006	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR002197	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR002078	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR001789	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025944	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0000160	Biological Process	phosphorelay signal transduction system	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02667	pilR, pehR; two-component system, NtrC family, response regulator PilR	-	Bacterial motility proteins	ko02035	deepkoala