Gene detail

Detailed information of ANN28878-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:13469936...13483571
NR annotation: CAH3190525.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN28878-RA

ATGCTCACATCCATACAGTATGGACTGAGCCTGGTACAATTTACATTATGGACCTTGAACCCGGTTAGTAAGAGTTCATCTGTCAGTTCAAGTGTTAAAGTGTTGGGTCAAGATGTGCAAATGTTCTTGGAGTATGATTTGGAGTCCCCCTCTCTTAACATAGCCTCTACATCACAGGAAGGTCATGAAGAGGAAGCCCCAAGTTTGTCCTCCAGAAGAACATTGAGAGTGACTCTTCTAAGCAGTGAATGGAGGTCAACAAAAGGAGGTGTGTCAACCATCAATAGAGAGCTGGCCATTCAGTTGGCAAAGTTTCCTGATGTGGAAGTCAGTGTCTATCTCCCTGAATGCAGTGAAGAGGATAAAAGGATTGCTGATGGTCACAATGTCCGTCTCATTCAAGCAGAAAAATTCCATGGTGTTGATCCAGATCTATGGTTGTCTTCTTTACCAGTTCATCATGTTGTGGACTGTGTGATTGGACATGGAGTCCAACTTGGCAGACAAGTTCAATTCATAAAACACCAACGTCGTTGTAAATGGATTCAGGTGGTCCACACCGACCCTGAAGAACTTGGAATGTTCAAAAATGATGCAGATGCTGTTTCTAAAGGAGAGGAAAAGCACAAGTTAGAAGTCAAACTCTGTGAATTGTCTGATCAAGTTGTAGCAGTTGGACCCAAGCTGGCAGAAGCTTTCTCAGGATATCTGCGTCCCTTTCAGAAAGATCAAAATGTTCTCAACCTCACCCCAGGTATCTTCTCTGAGTTTGCCGATGTAAAGCAAGCTTCTGAAGAAAGAAGAACATTTTCTGTTCTGTTGTTAGGGAATGGTGACAGTGAAGACTTGCAGCTGAAAGGTTATGACATTGCTGCTCAAGCAATTGCAAAGTTGAAAGACATGCCACAGCCCTACAAACTGAAGGTTGTCGGAGTACAAAGTGGAAGAGAGCAGCAAGTAGCAGAAATGTTGCTCCGGCAAGGCATTTCCCGTGATCAACTTGTTGTACGTGGTTTCAAAGAAAGAGAGAAGTTAGCTGAGCAGTTTTGTGAGGTAGATCTTGCTATAATGCCGTCAAGATCCGAGGGGTTTGGTCTCCCTGCTCTTGAAGCCCTATCTGCTGGTCTTCCTGTGCTTGTAAGTGGCAACTCTGGTCTTGGAGAAGCTCTTAAGAATGTGCCTCATGGTTCAAACTGTGTAGTGGATTCAGACGATCCTAAAGAGTGGGCCAAGGCAATCAGGAGTGTCCGTCAGAAAAGAAGAAATGTACGACTTGTGGAAATGAAGTCTATCTGTGAAGAGTATGCAAAGGTTTATAGCTGGGAGGAGCAGTGCAGGTCACTTGTGCAAAGAATGATGAACATCTCTTCAGTTTTCCCCTCTGAAGGTTTTTCTGATGGAAGACAGTCTTCAGTAGCAGGTTTGAGTCAGCTTCCTTTCCCTGCAGCCTCTCAAACTCATCAGACAAGTGGAACAAAAGGTTATTCTGTTGGAAGTCAGTCTTCAGTAGCAGGTTACAGTCAGCTTCCTTTCCCTGTCACGTCTCAGACTCATCTACAGATGAGAAGAAGTGGAACTGAAACCTCTCAAACTCATCTGACAAGTGAAACAGAAGGATTCTTGGAAATACGCTTGTTATTCCTTTTATTGGTGGTTTTAGTTATGACAGCTGAACAAATTTTCCGTGGTCTTGAGCAAATGCGATATGATGCAGGCAAGATCATCAGCAACACACATCTTCTTGGAGAGTTAAAGAAAATTGCTTCAGACAAAGGCTTGATAATCTCTGATAACAAGGGATCAGGAAATTGCATGTTTTATGCATTATCAGAACAACTGGACCTGGTGAAAGGAATCCAAATCTCTCATGAAGCATTGAGGCAGTGCATAGTCCAATACCTCAAGGAGAACCCTACACTGCAAGATGGGACAGAACTGTTTAACTTTGTACATGGACATCAGTCTTGGCCTGATTACCTAAGAAACATGGCAGCAGATGGGACATGGGGTGATCACATCATTCTCCATGCTGCAGCAAACTGCTTTAACACATGCATTCATGTGATCAGCAGTCTGTCACATGACTTAACTATCCACCCAGAACATGATGTTAGCAGCAACAGCCAGCTTGTGTTGGGACACCTGCATGAACATCACTATGTCAGCCTGCGACCCAAAACAGGTAGAGGAAGTTAA

Transcript

ANN28878-RA

Protein

Uniprot

Gene family

Uniprot term	Description
D5UJ42	D-inositol 3-phosphate glycosyltransferase OS=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134) OX=446466 GN=mshA PE=3 SV=1
D1BD84	D-inositol 3-phosphate glycosyltransferase OS=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) OX=446469 GN=mshA PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323	Domain	OTU domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050704	Family	OTU domain-containing ubiquitin thioesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan