Gene detail

Detailed information of ANN29030-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:16516558...16530386
NR annotation: CAH3019667.1, unnamed protein product, partial [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN29030-RA

ATGAATGGTATCTCGTCTGGCTGTGTGCAAGACAGGCAAAGCAACATGAATATGAAGTTCCTTGCAGTTTTGGTGTTTTGCACCGTGGCTTTGTATGTCATGGGATGCTGTGTATCAGCATCCGACATTAACCTCAAGGAAGATCCAAGAGGAACAGAATACAACAGACGATATATGGGTGGCTACATTAAGCCCAAGGCAGATCCCAGAGAAGCAGAATACGTCAGACGAAAGATGGATTTCCCTGCTGAGCCTGAGGAAGACGACGACGACGCAAAAGTGGAAAGCATCGAGGAAGCGGTTGACGTACCTAAAGTGGTTTTCAAGAATTCAAGGGAATTTCCAGCAATGGATTTCCAGACTCATGAAAAACGATCCATCGCTTATGTAAAGATTGTGGCTTTGACGGGTAACGACGAGGTACGTCTTGGTCAAGGTCAAAAGCCTCGCTGGGGTGCAAATCCACAACTGGAGGTCGTTCTGAACAATGGCTCGAAGTATCGAGCAGAGATGAAATACGACACGTATCCAGGTCAGCGATACGAAATAGAATTGAACGCCCACAGAGATTTTACACCACCACTCATCTGCACTCATAAAGACATAAAGGAAGTTTATCTCAAGGCTCAAGGTAATGTTGTATGGTACGTTGCATCAATCGACACCTACACCGCGGGAAAGAATAAAATGTACACTCATCTGACCACTGATCCAGGCTTCAGTATGTGGGTGGACGGCAACGAAGAACATCTTTACCCATACAATGCCAAAATGCACCTCCTTACCAATGCTGTCGCAGGATCCTGTATCTCGTACATACGTGTAGATGCAATGACGGGAGACAAGTATGGAGCAGGTTTCTCAGAAAAGTATAGAAAGAATCACTTGATAGTTCTCATTTTATCAGACAACAAAAAACGTCAGGCAGAACTTGAAGGACCTATGATACCACACCAACCTTATATGCGAGAGTTACACTTTGCAAGCTGGTTTCACACTAGACGGTGCGTGTCGTTATCTGACATTAAGGAAATTCACCTACAAACTCAATATGGAGGAAATGACGGTTGGTACATAGCATCCATTCGCACTTTTGTCAAGACTGGCGATAAGCAGTACCAGGATCTCACAAGTGATCCACACCTCAATAAGTGGCTTCAAGCTAATGAAGAGTACAAGTATTCTTACAATGCGAGAGACATTACACTAACATTCGTAGCTCAAGAAACTCTCAATTGTGAATACGGCAATCCAACTTGTGAATGTAGTGCATTCAGAAAGGTTTGTACATTTAACCTTGAAATTGACGAAATTCAAACCTTTACCAGCTATCAAAAGTTAGTGTTGCATGGACCTACAGGAATTGCTATGCGAGGATCCCAGGGAGTGATCTATTACTTTGGTGACGATGGGGAACCTACGCCACTGCAAACAAAAAGAAATTGTTCAATACTGGACAGCACCAGATGCACTTATCCCCAGTTTGTAGATGGTAAAACGTATCGTTCGGCAATAGCGGTCAATGGACAGATTCCTGGACCTACCTTGATAGTTCACGAGGGGCAAACTGTTGTAGTTCATGTTCACAACAATCTTACCACTCAGGGTATTTCAATTCACTGGCATGGAATGCACCAGAGAGGAACACCTTGGATGGATGGTGTAGGGCAAGTGACTCAATGTCCGATAGGGCCCTCATCGAACTTTTCATACGTGTACACCGCTAGTCCTTCTGGGACGTTTTGGTACCATTCTCACAGTGGTGCTCAAAGAACAGATGGCTTCTTCGGTGCACTCGTAGTTAAAGAAACCCCTGCAAGAAAAAGAGAAATCCGAAAGGAACTCGGAGAGCACGGTAAATTTGAAGACCTTCCATGTAAGCATACCTTAACGCTTCTAGACTGGCAATATGAGGCATCCTTGGACCTGTTCACTCAGAGCGACGCTAGCTTGGGCTATTATCTAAACAAACCGCTTGGAGAGGTGCCTACTCCAGATTATCAACAGTATAAATCCACAAGTAGTTTTGAAAAGGGAGGGGTTGGGCCTATCCCGTATTTTTCTGGAATCATAAATGGAAAAGGCAGGCATGCTAATGTTTCATACGTTAAAACAAGACTGAGTATATTTACTGTTGAGGCCGGAAAGAGATATCGCTTTCGATTAATTGGAGCCCAAAATCTGTATGCTTACAGATTCTCCATTGATGGCCATAAACTGACTGTGGTGGGCACTGACGGCTATTGGATTCAGCCCGTAGAAGACGTTGATTATATCATCATCCATTCCGGTGAAAGGTATGACTTTCTACTTAACGCAACAGATAGATTGGGCCTGAAGGACTACTGGATGCGTGCGGAGACTCTGGAGATTGATCAAAGTGGAACCGGGCCGCCCTTCCAGTCCTTAGGACACGTGGCAGAGGCTATTTTGCACTACAAACATAATGGGGACTCGGATGATCCGGATGTTAATGTACCGTCGACAAAATATCAAGAAATCAAAGATAAGTCTCCTCCCATACAGTGCAACCGCAACGACCCATGCAAAGCAGTGAACTGCCCATTTAAGAACTTTCATAAATCATATTATATTACCTGTATTAATGTTCACAGCCTACGTTTACTTGAGCCAACTCCACCTGATGAGCTTCCAAATGCAAACCCTAAATGGTATTGCAATAATTGCAGACATTTCATCAACTTCAATTTTGAGGGTGACTCTCAAACTAGCTCAGTGAATGGGCGTAATTTCATCCTTCCATCCTTTCCTCCCCAAACGCAGAATAAAGAGTTTCGAAAAAAGGATACAATTTGTAACCTTGGGAGCGACTGCAATCCATCGACACCCGAGTGTTCATGTGTCCATGTCATAGACATTCCACATCGGGAAACTATTCAAATGGTGTTTTCAGCAATTGGTGTCTACAACAATTCTCATCCAATTCATCTTCATGGCCACACATTTCATGTTGTTCACGTTGGATATCCAGAATATAACAAAACAACTGGTTTTATTGGAGAACACAACAGTCATATATACTGCCATGATATCCACTGTACTAAACCGGGGTGCGACAAGAAGAGATGTACCAGACCAAGCTGGAGGGAATCAATGTATTTTTCTATCGATAGCCATACGATCAGAAAGGACACAGTCATGGTCCCTGCCGGGGGCTACGTTGTGATCAATTTTCTGTCCGATAATCCTGGCTACTGGTTTCTTCACTGCCACATAGAGTTGCACCAACTGGAGGGAATGGCATTAATTCTCAATGAGGCTCATGAGGAGCAAAGACCACCACCCAAAGGGTTGAACAAGTGTGGAGACGTTGAGATAAGTGTCCCAATTTATCATCATTTTCAACCACAGAGTTACAGAATGAACAATTAA

Transcript

ANN29030-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8LPL3	L-ascorbate oxidase OS=Arabidopsis thaliana OX=3702 GN=AAO PE=1 SV=1
J9VY90	Laccase-1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=LAC1 PE=1 SV=1
P56193	Laccase-1 OS=Thanatephorus cucumeris OX=107832 GN=LCC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000747 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00394 all species →	Cu-oxidase	Multicopper oxidase	Domain	Interproscan
PF07731 all species →	Cu-oxidase_2	Multicopper oxidase	Domain	Interproscan
PF07732 all species →	Cu-oxidase_3	Multicopper oxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008972 all species →	Homologous_superfamily	Cupredoxin	Interproscan
IPR045087 all species →	Family	Multicopper oxidase	Interproscan
IPR001117 all species →	Domain	Multicopper oxidase, second cupredoxin domain	Interproscan
IPR011706 all species →	Domain	Multicopper oxidase, C-terminal	Interproscan
IPR002355 all species →	Binding_site	Multicopper oxidase, copper-binding site	Interproscan
IPR033138 all species →	Conserved_site	Multicopper oxidases, conserved site	Interproscan
IPR011707 all species →	Domain	Multicopper oxidase-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11709 all species →	MULTI-COPPER OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13624	CP; ceruloplasmin	EC:1.16.3.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.