Gene detail

Detailed information of ANN29051-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:16868106...16884147
NR annotation: XP_029188910.2, mesoderm induction early response protein 1-like [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T105	Mesoderm induction early response protein 1 OS=Xenopus laevis OX=8355 GN=mier1 PE=2 SV=1
Q5ZKT9	Mesoderm induction early response protein 1 OS=Gallus gallus OX=9031 GN=MIER1 PE=2 SV=1
Q8N108	Mesoderm induction early response protein 1 OS=Homo sapiens OX=9606 GN=MIER1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006880 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19426 all species →	MIER1_3_C	Mesoderm induction early response protein 1/3 C-terminal	Domain	Interproscan
PF01448 all species →	ELM2	ELM2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045787 all species →	Domain	Mesoderm induction early response protein 1/3, C-terminal	Interproscan
IPR000949 all species →	Domain	ELM2 domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR040138 all species →	Family	Mesoderm induction early response protein/metastasis-associated protein	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10865 all species →	METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan
GO:0042826 all species →	Molecular Function	histone deacetylase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN29051-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.