Genomic Location: Scaffold_674__1_contigs__length_80126:19458...21701
NR annotation: GGG26696.1, polyribonucleotide nucleotidyltransferase [Dokdonia pacifica]
| CDS | |||||
| ANN29129-RA | |||||
| Transcript |
| ANN29129-RA |
| Protein |
| ANN29129-RA |
| Uniprot term | Description |
|---|---|
| A0LYC0 | Polyribonucleotide nucleotidyltransferase OS=Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803) OX=411154 GN=pnp PE=3 SV=1 |
| A6H185 | Polyribonucleotide nucleotidyltransferase OS=Flavobacterium psychrophilum (strain ATCC 49511 / DSM 21280 / CIP 103535 / JIP02/86) OX=402612 GN=pnp PE=3 SV=1 |
| A5FJZ1 | Polyribonucleotide nucleotidyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=pnp PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03726 | PNPase | Polyribonucleotide nucleotidyltransferase, RNA binding domain | Domain | Interproscan |
| PF00575 | S1 | S1 RNA binding domain | Domain | Interproscan |
| PF01138 | RNase_PH | 3' exoribonuclease family, domain 1 | Domain | Interproscan |
| PF00013 | KH_1 | KH domain | Domain | Interproscan |
| PF03725 | RNase_PH_C | 3' exoribonuclease family, domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020568 | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR003029 | Domain | S1 domain | Interproscan |
| IPR004087 | Domain | K Homology domain | Interproscan |
| IPR012340 | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR015848 | Domain | Polyribonucleotide nucleotidyltransferase, RNA-binding domain | Interproscan |
| IPR036612 | Homologous_superfamily | K Homology domain, type 1 superfamily | Interproscan |
| IPR012162 | Family | Polyribonucleotide nucleotidyltransferase | Interproscan |
| IPR027408 | Homologous_superfamily | PNPase/RNase PH domain superfamily | Interproscan |
| IPR001247 | Domain | Exoribonuclease, phosphorolytic domain 1 | Interproscan |
| IPR004088 | Domain | K Homology domain, type 1 | Interproscan |
| IPR036345 | Homologous_superfamily | Exoribonuclease, PH domain 2 superfamily | Interproscan |
| IPR015847 | Domain | Exoribonuclease, phosphorolytic domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11252 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0004654 | Molecular Function | polyribonucleotide nucleotidyltransferase activity | Interproscan |
| GO:0006402 | Biological Process | mRNA catabolic process | Interproscan |
| GO:0000175 | Molecular Function | 3'-5'-RNA exonuclease activity | Interproscan |
| GO:0005829 | Cellular Component | cytosol | Interproscan |
| GO:0006401 | Biological Process | RNA catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K00962 | pnp, PNPT1; polyribonucleotide nucleotidyltransferase | EC:2.7.7.8 | Transfer RNA biogenesis | ko03016 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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