Genomic Location: Scaffold_674__1_contigs__length_80126:31077...33134
NR annotation: KAG1648827.1, LL-diaminopimelate aminotransferase [Nymphon striatum]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN29131-RA |
| Transcript |
| ANN29131-RA |
| Protein |
| ANN29131-RA |
| UniProt accession | Description |
|---|---|
| Q30ZX9 | LL-diaminopimelate aminotransferase OS=Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) OX=207559 GN=dapL PE=3 SV=1 |
| O66630 | LL-diaminopimelate aminotransferase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=dapL PE=3 SV=1 |
| B8DJJ6 | LL-diaminopimelate aminotransferase OS=Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=dapL PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0030271 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00155 all species → | Aminotran_1_2 | Aminotransferase class I and II | Domain | Interproscan |
| PF02153 all species → | PDH_N | Prephenate dehydrogenase, nucleotide-binding domain | Domain | Interproscan |
| PF20463 all species → | PDH_C | Prephenate dehydrogenase, dimerization domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004839 all species → | Domain | Aminotransferase, class I/classII | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR046826 all species → | Domain | Prephenate dehydrogenase, nucleotide-binding domain | Interproscan |
| IPR046825 all species → | Domain | Prephenate dehydrogenase, dimerization domain | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| IPR008927 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR004838 all species → | Binding_site | Aminotransferases, class-I, pyridoxal-phosphate-binding site | Interproscan |
| IPR003099 all species → | Domain | Prephenate dehydrogenase | Interproscan |
| IPR050881 all species → | Family | LL-diaminopimelate aminotransferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42832 all species → | AMINO ACID AMINOTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| GO:0070403 all species → | Molecular Function | NAD+ binding | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0004665 all species → | Molecular Function | prephenate dehydrogenase (NADP+) activity | Interproscan |
| GO:0006571 all species → | Biological Process | tyrosine biosynthetic process | Interproscan |
| GO:0008977 all species → | Molecular Function | prephenate dehydrogenase (NAD+) activity | Interproscan |
ANN29131-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
