Detailed information of ANN29214-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:19442844...19447963
NR annotation: PFX28380.1, Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM [Stylophora pistillata]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0CV25Secreted RxLR effector protein 78 OS=Plasmopara viticola OX=143451 GN=RXLR78 PE=3 SV=1
O00370LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000011 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20049
all species →		DUF6451Domain of unknown function (DUF6451)DomainInterproscan
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045609
all species →		DomainDomain of unknown function DUF6451Interproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027
all species →		REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for ANN29214-RA. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN29214-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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