Gene detail

Detailed information of ANN29255-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:22011923...22014083
NR annotation: CAB3989970.1, Transposon Tf2-9 poly, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN29255-RA

ATGAGTTTCGAAGAAGAGTTCCCTCAGGAACAGCTGTCAGATGAACATGAGTTGTATGTGGTTTATGATTTGGACACTGGGTGTGCACTGTCCCTCGCCCCGATTACTTTTGTGAAACAAGTTTGCCCCAATGTTGAAATAAAACCCTCAACTGTTGTACTTTCAACCTATACTGGTAAAACTGTGCACCCCTTGGGAGGGGCGCATGTGAGTGTCGAGTACATGGGATCAGAGCATACACTGCCTTTGCTGGTTGTACGTGAGGGTACTACTGCCTTATTTGGTTGGAACTGGCTCTCAGATGTCAAACTGGATTGGAAGAATTTGCCTGGTTTGAATCACATTGGACTTTTGCCATGTAGTTCCTCTGCAAATCCTGTTCCCCCAGGAAACCAGACGTTGGAATCAGTCCTGAAACAATACAGTGAATTATTTCAGCCCCAACTTGGATGTTACACTGGGGATCCAGTTGTGCTCAACGAAAGTAAAGAGGCCAAATTTCACAAAGCCAGACCAGTTCCTTACGCTTTACAATCTAAAGTGGAGAATGCTTTGCTTAAGATGGAAAAGGATGGTGTGATTGAATGGGTGAGGTCTGCGAGCAGTGCAGCCCCTATTGTGGTCGTTGGGAAGAAAGAAAGTGATGATGTCCGTGTTTGTGGAGATTTTAGTGTAACATACAATGCAAGTGCTCATGTTGAAACCTACCCTATGCCTCAGATTGAGGACATGCATTCAGCGTTAAAGGGGTTCCCCGTTTTTAGTGTCTTATATATAAAACAAGCCTATCATCAGGTACCAATTGCAAAAGAATCACAGTGTTATCTCACAATTAACACTCACATTGGCTTGTTTGTATTCATTGCCAAATGGTATTCACTCTGGTCCAGCCATCTTTCAAAGAATCTCTCTCATCAAATTGATGGACAATTTCGACCTGTGGCTTTTGCTTCTTGCACCTTGACACATGCTCAACAAAATTACTCCCACCTAGAAAAGGAGGCCTTCAGTATCATCTTTGGATTAAAGCGATTCCGACAGTACCTGTATAGCTGTTACTTTACAATTTTAACTGACCATCGACCCTTGCTAACTCTCTTGGGTCCGCAGAAACCTGTTCCTGCTCATGCAGCAGCTCGCCTTCAAAGATGGGCCCTTATCCTTGCTTCATACAATTACCAGATCGAGTATTGCAGTACTGGAGCACATGCTGATGCAGATAGCATATCTCGCCTTCCTCTACCTCAGACATGGTCACCCAAATGTGAAAATGTCGAATGCTACTTCTTGGACACAGATGTTGTCACTAATGTGACCAGTCAGATGATTAAGAAAGAGACTCAGGTGGATCCAGTTCTGTCTCAAGTGTACAATTATGTCATTAGTGGCTGGCCGTGTGTAGTGGATCCCACCCTGGTACCATTTAAGACAAGACAAGACAAATTAAGCACCCAGCAAGGTTGCATATTATGGGGTGCTCGAGTTATTGTTCCTCCTTCACTCCAAGAGAACGTGTTGCAAGAACTGCATGACACTCACCCCGGAATATCTCGAATAAAAGCGTTGGCCAGATCTTATGTGTGGTGGCCCAACATTGATTCTCACATTGAAAGAACTGTTTCTTCGTGTAGCACGTGCCAGTCTATGAGATCCAATCCTCCTACTGTTCAGATTCATCCCTGGACTTACCCAGCACGACCGTGGTCTCGTATTCATGTAGATTTTGCTGGGCCAGTCTCTGGATGTACTTACCTTGTTGTTGTAGATGCTTACAGCAAATTCCCAGAGGTAGTAAAAATGACTAATACGTCAGCTAGAGCAACTGTCACCGCATTACGGGACATCTTCAGCAGGCACGGTCTTCCAGAAATTATCGTATCCGACAATGGGCCACAATTTACAGCTACAGAATTTCAACGATTTTGTTCCAACAATGGAATTTTGCACCGTACTTCAGCAGCGTACAAGCCATCCACAAATGGTCAAGCTGAACGTGTTGTGCAGATTTTGAGGTCAGCTATTAAACAAGCCCACGTTACTAATGCTGACGTAGCTGCTGTCATTGCCAAATATTTATTGGTTTACTGA

Transcript

ANN29255-RA

Protein

Uniprot

Uniprot term	Description
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan