Genomic Location: Scaffold_343__1_contigs__length_109401:181...1575
NR annotation: MCP4080449.1, FliI/YscN family ATPase [Planctomycetaceae bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN29319-RA |
| Transcript |
| ANN29319-RA |
| Protein |
| ANN29319-RA |
| UniProt accession | Description |
|---|---|
| P23445 | Flagellum-specific ATP synthase OS=Bacillus subtilis (strain 168) OX=224308 GN=fliI PE=3 SV=2 |
| O83417 | Flagellum-specific ATP synthase OS=Treponema pallidum (strain Nichols) OX=243276 GN=fliI PE=3 SV=1 |
| Q7ARI8 | Type 3 secretion system ATPase OS=Yersinia pestis OX=632 GN=sctN PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015367 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18269 all species → | T3SS_ATPase_C | T3SS EscN ATPase C-terminal domain | Domain | Interproscan |
| PF00006 all species → | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR005714 all species → | Family | ATPase, type III secretion system, FliI/YscN | Interproscan |
| IPR050053 all species → | Family | ATPase alpha/beta chains | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR040627 all species → | Domain | T3SS EscN ATPase, C-terminal | Interproscan |
| IPR053716 all species → | Homologous_superfamily | Flagellar assembly and chemotaxis effector | Interproscan |
| IPR000194 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15184 all species → | ATP SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0030254 all species → | Biological Process | protein secretion by the type III secretion system | Interproscan |
| GO:0030257 all species → | Cellular Component | type III protein secretion system complex | Interproscan |
| GO:0045261 all species → | Cellular Component | proton-transporting ATP synthase complex, catalytic core F(1) | Interproscan |
| GO:0046933 all species → | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
ANN29319-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
