Genomic Location: Scaffold_1212__1_contigs__length_59450:11160...12299
NR annotation: WP_089369840.1, Mrp/NBP35 family ATP-binding protein [Dokdonia pacifica]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN29344-RA |
| Transcript |
| ANN29344-RA |
| Protein |
| ANN29344-RA |
| UniProt accession | Description |
|---|---|
| O66946 | Iron-sulfur cluster carrier protein OS=Aquifex aeolicus (strain VF5) OX=224324 GN=mrp PE=3 SV=1 |
| O49472 | Iron-sulfur protein required for NADH dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=INDH PE=2 SV=1 |
| P53383 | Iron-sulfur cluster carrier protein OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=mrp PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002978 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10609 all species → | ParA | NUBPL iron-transfer P-loop NTPase | Family | Interproscan |
| PF01883 all species → | FeS_assembly_P | Iron-sulfur cluster assembly protein | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019591 all species → | Family | Mrp/NBP35 ATP-binding protein | Interproscan |
| IPR034904 all species → | Homologous_superfamily | Fe-S cluster assembly domain superfamily | Interproscan |
| IPR000808 all species → | Conserved_site | Iron-sulfur cluster carrier protein-like, conserved site | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR044304 all species → | Family | Iron-sulfur protein NUBPL-like | Interproscan |
| IPR033756 all species → | Family | Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 | Interproscan |
| IPR002744 all species → | Domain | MIP18 family-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42961 all species → | IRON-SULFUR PROTEIN NUBPL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016226 all species → | Biological Process | iron-sulfur cluster assembly | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0140663 all species → | Molecular Function | ATP-dependent FeS chaperone activity | Interproscan |
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03593 | mrp, NUBPL; ATP-binding protein involved in chromosome partitioning | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
