Gene detail

Detailed information of ANN29348-RA in Montipora grisea

Genomic Location: Scaffold_1212__1_contigs__length_59450:50045...53846
NR annotation: CAE7782603.1, rnr-1, partial [Symbiodinium sp. CCMP2456]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN29348-RA

ATGAGTGCAGTAGAACCTATCTTAGCAGAAAATAAAGACAGATTTGTGATATTTCCTATCCAACACCATGATATATGGGAGTGGTATAAGAAATCAGAGGCTAGTTTTTGGACTGCAGAAGAAATTGATCTACACCAAGATCTTACAGATTGGTCTACAAAACTTACAGATGACGAACGTTATTTTATAAAACACATCCTTGCCTTTTTTGCCGCATCTGATGGAATCGTAAACGAAAATCTTGCAGAAAATTTTGTGAATGAAGTGCAATACTCTGAAGCAAAATTCTTTTACGGATTCCAAATCATGATGGAGAATATCCATTCAGAAACCTACTCACTGCTTATCGACACCTACGTAAAAGATGATGCAGAAAAAGATAAACTTTTTAACGCTATAGAAAACTTTCCTGCTATTAAGAAAAAAGCAGATTGGGCCCTTAAATGGATTGAAAGCCCAAGCTTTGCAGAGCGTCTTATTGCTTTTGCTGCCGTAGAAGGAATTTTCTTTTCTGGAGCATTTTGTTCTATTTATTGGTTAAAGAAAAGAGGGCTTATGCCTGGACTTACTTTTTCTAATGAATTAATATCTCGTGATGAAGGAGTGCATTGTGATTTTGCAGTTCACTTACACAATCATCACTTGGTGAATAAAGTGCCGAAAGAACGTATTAAAGATATTATCGTAAACGCACTAGATATAGAGCGTGAGTTCATTACCGAATCATTGCCTGTGAGCCTTATTGGTATGAATGCAAACTTAATGACACAATACTTAGAGTATGTAACAGATCGATTACTTACAGAATTGGATTGTGAGAAAGTATACAACACTGCAAATCCTTTTGATTTCATGGATATGATTTCATTACAAGGAAAAACAAACTTCTTTGAGAAGCGTGTTGGAGAATATCAAAAAGCAGGAGTTGTAAAAGATAAAGATGATGATGGAGAAGTAAAAAGAGATGGTCGTCAGGAACCGGTCATGTTTGACAAAATTACTTCTAGAGTAAGAAAATTATGTTACGGATTAAGCGATTTTGTAGATCCTGTAAAAATTTCGATGCGTGTAATCGAAGGTCTTTATGATGGAGTAACCACAAGTGAACTTGATAATCTTGCGGCAGAAACATCAGCTTCGATGACTACCAGTCATCCGGACTATGCAAAACTTGCAGCACGTATTTCTGTCTCAAACCTACATAAAAATACGAAGAAGTCTTTCTCAGAAGTGATGACAGACTTATATGAGTATGTAAATCCACGTACAGGAAAGAAAGCCCCAATGATCGCGGATGAAGTCTATCAGGTAATGATGGACAATAAAGATGAGATTGATTCTATGATCATCTATAACCGTGATTTTGGATACGATTATTTTGGTTTCAAAACTTTAGAACGTTCATATCTCTTAAAAATAAATGGTAAAATAGCAGAACGTCCTCAACATATGCTTATGCGTGTGTCTATAGGAATTCATTTAAACGATTTAGAAGCTGCAAAAGAAACGTATGAGTTGATGTCTAAAAAATATTTTACACATGCAACTCCTACATTATTTAATTCAGGAACGCCTAAACCACAAATGTCATCTTGTTTCCTACTGACAATGAAAGAAGACAGTATTGATGGTATATACGATACACTTAAACAAACAGCAAAAATATCTCAGAGTGCGGGAGGTATAGGTTTATCTATACATAATATTCGTGCAAAAGGATCATACATCGGAGGAACTAATGGTACTTCTAATGGAATCGTGCCTATGCTGAAGGTATTTAATGATACAGCAAGATATGTAGATCAAGGAGGAGGAAAACGTAAAGGTTCTTTTGCTATGTATATGGAACCTTGGCATGCAGATATTTTTGATTTCTTAGATCTTAAGAAAAATCACGGAGCAGAAGAAATGAGAGCTCGTGACCTTTTCTATGCAATGTGGATTTCAGATTTATTTATGAAACGTGTACAAGAAGATGGTCCATGGACGTTGATGTGTCCTAATGAGTGTCCAAATCTTTTTGACGTGTATGGAGATGAATTTGAAGCATTATATACAAAATACGAAGAAGAAGGAAAAGGCCGTAGAACAATCAAAGCGCGTGAGCTTTGGGAGAAAATTATGGAATCTCAAATTGAGACAGGTACTCCATACATGCTTTATAAAGATGCGGCAAACCGTAAATCAAACCAAAAGAACCTTGGTACTATACGTTCTTCAAACTTATGTACTGAAATTCTAGAATATACATCGGCAGATGAAATTGCAGTATGTAATCTTGCATCTATAGCACTTCCTATGTTTATAAAAGATGGTGCTTTTGATCACCAAGAATTATATAACATTACTGTAAGAGCGACTAAAAACTTAAATACAGTTATAGATCGTAATTACTATCCTGTTAAAGAAGCTGAAAATTCAAATATGCGTCACCGCCCTATTGGGTTAGGAGTACAAGGTCTTGCAGATACATTCATTAAACTGCGTTTGCCTTTTACAAGTGATGAAGCGAAAAAACTGAATCAAGAAATCTTTGAAACACTTTATTTTGCAGCAGTAACTGCGTCTAAAGATTTAGCAATTAAAGAAGGTCCATATTCTTCTTTTGAAGGATCTCCAATATCAAAAGGAGAATTCCAATATAATCTTTGGAATATAAAAGATGAAGAATTAAGTGGTCGTTGGGATTGGGCAGCTTTACGTAAAGAAGTAATGGAGCATGGTGTGCGTAATTCACTATTAGTAGCGCCTATGCCTACAGCTTCAACATCACAAATTCTTGGAAATAACGAAGCATTTGAGCCTTATACTTCAAATATTTATACACGTCGTGTACTTTCAGGAGAGTTTATTGTGGTAAATAAACACCTTCTTGAAGACCTAGTTGAGCTTAATCTTTGGAATGATGATCTTAAGGCAGCAATTATGCGTGCAAATGGATCTATTCAAGGAATAGATGTGATTCCTCAAGAATTAAAAGATCTGTATAAAACAGTTTGGGAGATGAGTATGAAAGATATTATAGATATGTCTCGTCAAAGAGGATATTTTATCGATCAGTCGCAATCACTTAACTTATTTATGGAAGGAGCAAACTTTGCTAAACTTACATCAATGCATTTCTATGCATGGCAAAGCGGACTTAAAACAGGTATGTATTATTTACGTACAAAATCTGCGGTTGATGCTAAGAAGTTTACATTATCTGCAAAGAAAAAAGAAGCTCCACAACCTGCACAACAGCAAGTGGCAGCTAGAGCAGCTCAAAAACTGACTGCAACACAGCAACCAACAAGCCCGCTTCCGTCGGCTAATGTTGCTAATGTGCCACCTCAAGTAGTTGAGCATGCACAGGCAGCAGCAGATATGCAAGTACAGATGAGTCTTGAAGAGCCTTCGGCTTCTTATGAAGTAAAGCAATCTAATCTTCAAGGACAAACTCAAGCAACATCACAGCCTAATACAGAGCCTATGACGCCAGAAGAAATGAAAGCGATCATAGCGCAGGCAAAAGCATCTCAAGGAGATGACGATTGCTTAATGTGTGGCTCTTAA

Transcript

ANN29348-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36602	Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdc22 PE=1 SV=2
P21524	Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RNR1 PE=1 SV=2
Q9UW15	Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=rnr-1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003633 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00317 all species →	Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	Domain	Interproscan
PF00268 all species →	Ribonuc_red_sm	Ribonucleotide reductase, small chain	Domain	Interproscan
PF03477 all species →	ATP-cone	ATP cone domain	Domain	Interproscan
PF02867 all species →	Ribonuc_red_lgC	Ribonucleotide reductase, barrel domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005144 all species →	Domain	ATP-cone domain	Interproscan
IPR013346 all species →	Domain	Ribonucleotide reductase, class I, alpha subunit, C-terminal	Interproscan
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR033909 all species →	Family	Ribonucleotide reductase small subunit	Interproscan
IPR012348 all species →	Homologous_superfamily	Ribonucleotide reductase-like	Interproscan
IPR013509 all species →	Domain	Ribonucleotide reductase large subunit, N-terminal	Interproscan
IPR039718 all species →	Family	Ribonucleoside-diphosphate reductase large subunit	Interproscan
IPR000788 all species →	Domain	Ribonucleotide reductase large subunit, C-terminal	Interproscan
IPR000358 all species →	Family	Ribonucleotide reductase small subunit family	Interproscan
IPR008926 all species →	Homologous_superfamily	Ribonucleotide reductase R1 subunit, N-terminal	Interproscan
IPR030475 all species →	Active_site	Ribonucleotide reductase small subunit, acitve site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11573 all species →	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009263 all species →	Biological Process	deoxyribonucleotide biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004748 all species →	Molecular Function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005971 all species →	Cellular Component	ribonucleoside-diphosphate reductase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00525	E1.17.4.1A, nrdA, nrdE; ribonucleoside-diphosphate reductase alpha chain	EC:1.17.4.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.