Genomic Location: Scaffold_4983__1_contigs__length_30601:18639...20072
NR annotation: MBL4638782.1, EAL domain-containing protein [Pseudomonadota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN29375-RA |
| Transcript |
| ANN29375-RA |
| Protein |
| ANN29375-RA |
| UniProt accession | Description |
|---|---|
| P38097 | Probable diguanylate cyclase DgcE OS=Escherichia coli (strain K12) OX=83333 GN=dgcE PE=2 SV=2 |
| Q605Q9 | Formate--tetrahydrofolate ligase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=fhs PE=3 SV=1 |
| Q8EJM6 | Cyclic di-GMP phosphodiesterase PdeB OS=Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=pdeB PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004590 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00990 all species → | GGDEF | Diguanylate cyclase, GGDEF domain | Domain | Interproscan |
| PF01268 all species → | FTHFS | Formate--tetrahydrofolate ligase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000160 all species → | Domain | GGDEF domain | Interproscan |
| IPR052163 all species → | Family | Diguanylate Cyclase/Regulatory Protein | Interproscan |
| IPR029787 all species → | Homologous_superfamily | Nucleotide cyclase | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR000559 all species → | Family | Formate-tetrahydrofolate ligase, FTHFS | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46663 all species → | DIGUANYLATE CYCLASE DGCT-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004329 all species → | Molecular Function | formate-tetrahydrofolate ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
ANN29375-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
