Gene detail

Detailed information of ANN29428-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:25296266...25322006
NR annotation: CAH3116147.1, unnamed protein product, partial [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN29428-RA

ATGCTCTACACTTTACTTGCTGCTATGAGACTTGAATTAATCCTTCAGTCGATCCTTGTTCTGTTTGTCGTTTCAGCACCGAGTGCTCCTGCCTTCCTCAACCACACAGACATAGCGCCTAGCGTGCAACATGGCCCAAGAGTACGTGTGACCTGGAGTAGGCCTGTTTTTGAAAATGGAATAATCAGGAATTACACTCTATTCTATAGCCACCGTGAAGATTTTAAAAGTGTCCACACAGTGACCTTTGGACCAGACACGTTTAGTTACGTAGTTGATGTGTTGGGTGGTATAAACTATCAGTTCATCGTGTTAGCGGTGACAATCAAACCTGGGACAAACACTTCAATATCTGTGGATACCCGTGAATATGCACCCATAGCTGGTCCAGATTACGTTTCCTCCTTAGAAGTGAACGAAACCACTTTCAACATTTCGTGGGCTCCTCTAACAAGAGACAAGAGTTATGGCACAATTAAGGTGTATGAAGTAATGTCGGATATAGTATTCAGTGCAATGAGATCAAAGCGATCTGTTGGCGCCATCAGAAGCTACAATTCGACAAAAACGTTTTTGGTCCTGTCTGGATTACAGATGTGTTCCACATACCACATATCTGTCCGAGCCTATACTGTAGCAGGTCCGGGACCCGCTGGTAATTACTTGATTTTGAAAACGTCAGCACCGGGAGAACCCACAGAGTTGACGATAGACATTGGAAAAACAGAAGGGATATTGAAATGGAAGGAGCCATCAGTAAGACCAGACGCCGTCACCGAGTATACAGTGAATTACTCTGGAACAAAGGAGTACGATAAAGCATTTTCAGATATTAAATCAAAAAGTGTAGGGAAATCGACACAATACACGGTGACGGATTTGTTTCCAGGCACTTCCTACAAATTCAAGGTTTATGCGACCTCTGCATGTGGAGATAGTTCTCCTTTAACATCAGATGTGAAAACAAAGATGGCAGATCCTCTTCCACCAGATGTTAAGAAAATAACAAAGAAAAGTGTTTCTGAGTCAAGTGCTGTAATTCAGCTCTGGCCAGCAAAACAAATAAACGGGCCCATCAGTTCTTATCAGGTTATAGTGCTGAAAGTTGTAGACGGTGTTGAAAAGCTTCCAAATGACTATGCCAAAGGATTAAAAAGTGCCTCCGTAGAGAAACTGAACTTCTACATTGCTGCTGAGATCGATAACGATGCAGTGTACAAGACATCCTGGGAATTTACTGTCGGTGATGAACAGAAATATAAAGAATACATGAACAAAAAACTTGGGAATGGACAAGAATACGTGGTGTACCAAAGAGCAATAACTCGTGATAATAGCGGTATTTTTGAAGGAAGCGTCAGTCGAGTTGCAACCATATCTGTCAAAGATGTTGGAGGAGACAAGGAAGCCCAATCTTCTTCGAGTCCTGCCGCTGCTATAGCTGTACCTGTAGTGCTAGTAATACTGCTTATACCAGCACTTGTCGTTGGATTTCTTTTCTATCGAAGGAGAAAAAGTGCAGAAAAAGGGAGGAAAGATACATCTGTTCACCTTGATGACATCGGACATCGTCTAACTGAAACAACAGAAAGCAGAGACAACCTTGTATATTCAAATGCTGACGAGGTGAAAGCCACCGCTAAATCAGATAAAACGATTTATCAGAATTTTGAAAAGGATACTTCTGAAACATCAGCCAATCAGATTTATCAGAATGCTGATGACATTCACACTACCGGGAAAGCAGCCAATCAGATTTATCAGAACAGTAAAGTGGAAACCACGTCCGGACAAGACAATCAAATATATCAGAATACTGGTGGCAAGCGCTCAGGAAAGGGTTCCACGAGACCAACATCTCAAATAACAGAACCTGTGTACAGCGAAGCTGAGGACGGCAAGCCAAAAGCGGTCCCGGCGTCTAAGTTTGCAAATTACTTTAAGAGCAAGACGATCAATGGAGCCGCTGTGTTGCGAGATGAATTTAAGAACTTTCCAGGAGGGATGCTGTCACCCTGGGAGGTGGCCAAGAAGAACAAAGCAAAAAACCGTTATGGCAACATAGTCTCATATGATCATTCTCGTGTTGTGTTGGAGCCTACAGAAGGAGACCCATCTGACTACATTAACGCAAGCTACATTCCGACGTATGACGAGGAATCGATGTGTTACATTGCAACTCAAGGTCCAACTTCTGTGACGGTGTCTGATTTTTGGCGAATGATCTGGCAAGAGAACTGCACCATTATTGTTATGCTTACAAACCTAGTGGAACAAGGAAAGGCCAAATGTCACCAGTATTGGCCAGACAGTACTTCTAAATTTGGCGCCATTACAGTTACGTTACAAAAGACTGAAACCTTTGCTGATTACGTTATTCGAACGCTGGTTGCAATTAAGAACTCAGAAAAGCGGGAGGTAGTTCAGTTTCATTACACAACATGGCCAGACAGGGGTGTTCCTCATCATTCCACAGCGTTATTGGCATTCAGGTGGAAAGTTCATGCCAGACACCAACTTAATCAAGGACCGCTTGTTGTGCATTGCAGCGCTGGCGTTGGACGAACTGGTACCTTCATTGGTATTGATGCTATGTTGGAAAGTGCTAAGGAGCAGGGAAGCGTGTTTATTCAAAAATACTTGCAAGCCATGCGCAGACAACGCCCATATATGGTGCAGAAGGAAGAGCAGTATGTGTTTTTGCATCAAGCAGTAATGGAGGCTTTAGTTTGTGGAAACACACAGGTTTCTCCACAGGACTTAATGATTAGGATGACCAAACTCGCTAGAGTCCATAAGTCTTCAAAGAAAACAGGATATGCGGAAGAGTTTAAGCGTTTGCAATTGGTCAGTGAATCTGAAGACTCCGGAGAAGAATCACCAGCAGCATTTAAACCAGCAAACATCGGCAAGAACAGATTTCCCAACATTGTACCAATTAACGGTTCTCGGGTGCTGTTGAGGGCTTCTGAGCCAGATAAGGACTACATTAATGCCTCTTTTGTTGACGGCTACACTCAACGCAACGCTCACATCTTGACACAAGCGCCATTGGATAACACTATTGAAGACTTCTGGCGTATGGCGTTGCAATACGATGTCGGCACAGTTGTGATGTTAAACAACTTAGAAGAGGGAGAAGAGAGCTATCCTCAATACTGGCCTTCAGCTGGGGTTGTTACGTACGGTAATGTCACATTAGAGGTTCTGTCAGAAACCAGTTCAAAGAAGATCACGACCAGGAGGGTCAGTGTGTCGGATGCAAAGCCTCCAAAGAAGAAATCAACTGTTCAACACTTACAATTCACTGGATGGAACGACCCTAACTCATGCCCAGACCCCAGAGAGATCATTTCACTGTTGACAGCAGTTGAGAAGTCTCAACAACAAACTGGAAATGGCATCATTGTTTTTCAATGCAGTGACGGTGTTGGTCGCAGTGGTACTCTTTCTGCCGTAATGTCACTGATTGAGAGAATCAAGACCGAGCAGACTGTTGATGTGTTTCAGACAATTAAACTGATCCGAGTCAAGCGCCCTGGTGCTGTTGTGACTTCGGAGCAATACACATTTTGTTACAAGACCGTCCTAGCATACCTGGACTCTTTCAAGACGTATTCAAACTTCGCAGATTGCTGA

Transcript

ANN29428-RA

Protein

Uniprot

Uniprot term	Description
P28828	Receptor-type tyrosine-protein phosphatase mu OS=Mus musculus OX=10090 GN=Ptprm PE=1 SV=2
P28827	Receptor-type tyrosine-protein phosphatase mu OS=Homo sapiens OX=9606 GN=PTPRM PE=1 SV=2
P18433	Receptor-type tyrosine-protein phosphatase alpha OS=Homo sapiens OX=9606 GN=PTPRA PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan