Gene detail

Detailed information of ANN29508-RA in Montipora grisea

Genomic Location: Scaffold_1965__1_contigs__length_47420:22513...24273
NR annotation: MBN1834860.1, protein translocase subunit SecD [Spirochaetales bacterium]
Species abbreviation MGRIS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O83425	Protein translocase subunit SecD OS=Treponema pallidum (strain Nichols) OX=243276 GN=secD PE=3 SV=1
O51596	Protein translocase subunit SecD OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=secD PE=3 SV=2
B1H0M4	Protein translocase subunit SecD OS=Endomicrobium trichonymphae OX=1408204 GN=secD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0233701 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21760 all species →	SecD_1st	Protein translocase subunit SecDF, P1 domain, N-terminal	Domain	Interproscan
PF02355 all species →	SecD_SecF	Protein export membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005791 all species →	Family	Protein translocase subunit SecD	Interproscan
IPR022645 all species →	Family	Protein-export membrane protein SecD/SecF, bacterial	Interproscan
IPR048631 all species →	Domain	Protein translocase subunit SecDF, P1 domain, N-terminal	Interproscan
IPR022813 all species →	Family	Protein-export membrane protein SecD/SecF, archaeal and bacterial	Interproscan
IPR048634 all species →	Domain	Protein export membrane protein SecD/SecF, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30081 all species →	PROTEIN-EXPORT MEMBRANE PROTEIN SEC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0015450 all species →	Molecular Function	protein-transporting ATPase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03072	secD; preprotein translocase subunit SecD	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.