Gene detail

Detailed information of ANN29560-RA in Montipora grisea

Genomic Location: Scaffold_1710__1_contigs__length_50847:23540...23914
NR annotation: WP_054463463.1, 50S ribosomal protein L7/L12 [Phaeobacter sp. 11ANDIMAR09]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28UX8	Large ribosomal subunit protein bL12 OS=Jannaschia sp. (strain CCS1) OX=290400 GN=rplL PE=3 SV=1
Q1GK50	Large ribosomal subunit protein bL12 OS=Ruegeria sp. (strain TM1040) OX=292414 GN=rplL PE=3 SV=1
Q160X6	Large ribosomal subunit protein bL12 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=rplL PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00542 all species →	Ribosomal_L12	Ribosomal protein L7/L12 C-terminal domain	Domain	Interproscan
PF16320 all species →	Ribosomal_L12_N	Ribosomal protein L7/L12 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000206 all species →	Family	Large ribosomal subunit protein bL12	Interproscan
IPR014719 all species →	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR036235 all species →	Homologous_superfamily	Large ribosomal subunit protein bL12, oligomerization domain superfamily	Interproscan
IPR013823 all species →	Domain	Large ribosomal subunit protein bL12, C-terminal	Interproscan
IPR008932 all species →	Domain	Large ribosomal subunit protein bL12, oligomerization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45987 all species →	39S RIBOSOMAL PROTEIN L12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02935	RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.