Gene detail

Detailed information of ANN29562-RA in Montipora grisea

Genomic Location: Scaffold_1710__1_contigs__length_50847:44562...47242
NR annotation: WP_209196733.1, MULTISPECIES: ABC transporter ATP-binding protein [unclassified Ruegeria]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN29562-RA

ATGGCGCTGTCCCCTCTCAACCAGCGCCGCTGGCGCAACTTCCGGCGCAATGGCCGGGCGTTCTGGTCGCTGATCATCTTCTCGGTGCTGTTCGGCCTGTCGCTGTTTGCCGAGTTCATCGCCAATGACAAACCGATCCTGGTGAAATATCGCGGCGAGCTCTACACGCCGGTTTTCAATTTCTATGCCGAGACCGAGTTCGGCGGCGATTTCCAGACCGAGGCGATCTATCGCGACCCCGAGGTCATGTGCCTGATCGACAGCGGCGGTCTGGATCAGTGTTTCGACGACCCTGAAGGCATCATCGACGAAATCAAGGCGGGCACCTTCGAAGCTGATGGCTTTGAACGCGGCTGGGCGATCTGGCCTCTGATTCCCTATTCCTTCAACACAAGCGTCGATCGTCCGGGGGCCGCGCCGCTGCCGCCAAACGGCCAGAACCTGTTGGGCACCGACGACACCAAACGCGACGTGTTGGCGCGCGTGATATACGGCTTCCGATTGTCGATCCTGTTCACGTTGATCGTCACCGGGGCAGCCAGTCTGATCGGGATCTTCGCCGGGGCCATTCAGGGCTTTTTCGGCGGCTGGCTCGACCTGATTTTCCAACGCATCATCGAAATCTGGTCGTCCACGCCCTCGCTCTACGTCATCATCATCACGTTCGCCATTCTGGGGCGAAGTTTCTGGCTGCTGGTCATCCTGATGATCCTGTTCAGCTGGACCGGATTGGTCGGCGTTGTGCGGGCCGAGTTCCTGCGTGCGCGGAACCTTGAATATGTCCGCGCCGCGCGGGCGCTGGGCGTGGGCAACATGACCATCATGTTCCGCCACATGCTGCCCAACGCGATGGTCGCCACGCTGACGTTCATGCCCTTCATCGTCACCGGCACCATTGGCGGGCTGGCCTCGCTGGACTTCCTTGGCTTTGGCCTGCCATCCTCGGCCCCGTCGCTGGGGGAGCTGACGTTGCAGGCGAAACAGAACTTGCAGGCCCCGTGGCTGGCCTTCACCGCCTTCTTCACCTTTGCCATCATGCTGTCGCTGCTGGTCTTCATCTTCGAAGGCAAAGACCTTCTCATGAGCCTTTTGGATGTGAACAACCTGAAGGTCTCGTTCAAGCAGGACGGGCAGGTTTCGGCGGCGGTTAAGGGCGTGTCGTTCACCGTTGATCGGGGTGAAACGGTGGCTCTGGTAGGCGAATCGGGGTCAGGCAAATCCGTGACCGCACTCAGCACCGTATCGCTGCTGGGCGACAGTGCGATTGTCGAAGGGTCGGTCACCTATGACGGGCAAGAGATGATCGGCGCGTCCGAGGACAGGCTGATGGATGTGCGCGGCAACGATATCAGCTTTATCTTTCAAGAACCGATGACCTCGCTGAACCCGTTGCACACGATTCAGAAGCAGATGGCGGAATCGCTGGCGCTGCATCAGAACGTGACAGGCGACGCGGCGCGGGAGCGGATCGTTGAATTGCTGACCAAGGTCGGCATTCGTGACCCCGAAGAGCGGCTGGACAGCTATCCGCACCAGTTGTCAGGGGGGCAGCGACAGCGGGTGATGATCGCGATGGCGCTGGCGAACAAACCCGACATCCTGATCGCGGATGAGCCTACGACCGCGCTGGACGTGACCATTCAGGCGCAGATTCTGGAACTGCTGGCCGAGCTGCAGGAAGCCGAGAACATGGGGATGTTGTTCATCACTCATGATCTGGGCATCGTGCGCCGCATCGCCGATCGTGTCTGCGTGATGAAGGATGGAGAGATTGTTGAAACCGGCGTGACAGCCGACATCTTCGACAATCCGCAACATCCCTATACGCGAAAGCTGTTGGCGGCAGAGCCCTCGGGTCACCCCGACCCGGTTGCAGCCGACGCCGAAGAGGTCGCTCGCACCGATCACCTGAAAGTCTGGTTTCCGATCCAGCGCGGGTTTCTGAAACGAACCGTCGGCCATGTGAAAGCCGTCAACGATGCGACACTCAGCGTTCGTGCCGGTGAAACGCTAGGCATCGTCGGCGAAAGCGGCTCTGGCAAGACCACCCTGGCGTTGGCCATCATGCGATTGATTGCGTCCGAGGGCGGGATTACCTTCCGCGATCAGGACGTGCGCCGCTGGTCAACGCGCGAGTTGCGTCGGCTGCGCAAGGATATGCAGATCGTGTTTCAGGACCCGTTCGGCAGCCTCAGCCCGCGCATGACCTGTATGCAGATCATCGCCGAAGGTCTGGCCATCCACAGTGTTGATCCCCACCGCGCCCCGCGCGAGTTGGTGGCCGAAGTGATGACCGAGGTTGGGCTGGACCCCGCCGCGATGGACCGCTACCCGCACGAATTCTCGGGCGGTCAGCGGCAGCGCATCGCCATCGCGCGCGCCATGGTGCTGCGGCCCAAGCTGCTGGTGCTTGATGAACCCACCAGCGCGCTGGACATGACGGTGCAGGTTCAGATTGTTGATCTGCTGCGGAATCTGCAGCGCAAATACGGATTGGCTTATCTGTTCATTAGCCATGACCTCAAGGTCGTACGGGCGATGTCCCACAACGTCATCGTCATGCGCAACGGCGATGTGGTCGAGATCGGCACAGCCGAAGACCTGTTCGAAAACGCCCAGACCGATTACACGCGTGAACTGATCGCGGCGGCGGGCTGA

Transcript

ANN29562-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9CKL2	Peptidoglycan transport ATP-binding protein YejF OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=yejF PE=3 SV=1
P33916	Uncharacterized ABC transporter ATP-binding protein YejF OS=Escherichia coli (strain K12) OX=83333 GN=yejF PE=1 SV=1
Q323W5	Glutathione import ATP-binding protein GsiA OS=Shigella boydii serotype 4 (strain Sb227) OX=300268 GN=gsiA PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009449 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12911 all species →	OppC_N	N-terminal TM domain of oligopeptide transport permease C	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00528 all species →	BPD_transp_1	Binding-protein-dependent transport system inner membrane component	Family	Interproscan
PF08352 all species →	oligo_HPY	Oligopeptide/dipeptide transporter, C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025966 all species →	Domain	Oligopeptide transport permease C-like, N-terminal domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR000515 all species →	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR035906 all species →	Homologous_superfamily	MetI-like superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050388 all species →	Family	ABC Transporter, Nickel and Peptide Import	Interproscan
IPR013563 all species →	Domain	Oligopeptide/dipeptide ABC transporter, C-terminal	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43297 all species →	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0015833 all species →	Biological Process	peptide transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN29562-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.