Gene detail

Detailed information of ANN29583-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:28223025...28225498
NR annotation: CAB3985004.1, Enzymatic poly [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN29583-RA

ATGAATCAGACTTCTAACAACGTTGAGGTAAGGAATGTGTCAGAGCAATCTATTAAAATTACTGGTGGAAGACTGAAACAATTTACCTCTCAGTGGCAATGCATAACCTCAGATCCTTTCATACTTAATAGTGTGAAAAATTATAAAATTGAGTTTCAAAATGGAGAGCCAATGCAGTTTATGCCACCAAAAGAAATAAATTTTACAAAACCAGAGCAGGAGGTCATTGACAATGAAATTGATAAACTGCTGACCAAAGGTGTGATTTCAGAAACCACACATTGCCCTGGTGAATATATTTCTACTATATTCATACGCCCTAAGAAAGATGGAGGGTTTAGATTAATTCTAAATTTGAAGAATTTGAATGAACATGTGGAGTATCAACATTTTAAGATGGATACCTTACAATCGGCAATAAGGCTTATGACTCCAAACTGTTATATGGCCTCAGTAGACCTGCGTGATGCATACTACTCAGTGCCAATTCACAAAGATGATCAAAAATATCTGAGGTTTTGCTGGAAAGGTAGATTGTTTCAGTTTACATGTCTACCAAATGGTCTGGCTTGTGCACCCCGACTCTTCACAAAAATCCTTAAGCCAGTGTATGCTACGCTGCGCCAGAAGGGTCACCTAAATGTAGGCTATATCGATGACTCTTATTTACAAGGGGAGAGTGTGGAGGACTGCCAAGCCAATATTAATGATACCTGTGACTTATTTTCAACATTGGGTTTTATCCTACATCCTGATAAGTCGGTCTTACAGCCAGTTCAAGTCCTTACATTTCTGGGATTTGTCTTGGATTCAGTTAATATGACTGTCTCCTTAACACAGGAAAAAATCCAGCGCATAAGGGAAAGATGCAAGAAAATGATGGAGCTTGTTGAGCTCCCAATCCAGGAACTAGCTAGCTTTATAGGGCTTTTAGTGTCAAGTTTTCCTGGGATCTTATATGGACCACTGTATTATAGACAACTTGAGAGGGATAAAACTACAGCCTTAAGACAAAACTATGGCAATTATAATGCTCAAATGAGATTATCCCAAGAAAGCTTTTCAGAGATAAAGTGGTGGTATGATAACATACAGACCAATAACTACCCCATATTATTGCCTAATTCAAAGGTTGATGTAATAATTTACACCGATGCATCAACTAAAGGATGGGGAGCTGTCAAAGAGACAGAGAAAATAGGAGGTAGATGGTCAGAGGAAGAAGCAAAATATCACATTAATTGTCTGGAGCTGTTAGCTGCAAATTTTGGACTTCAGGCATTTTGCAAAAATGAACAAGGCATTCATGTTAAGATTTACTCTGATAACTCTACAACTGTGAACTATATTAATGCTATGGGAGGTGTACATTCTAGGGAATGTCACACTATTGCTAAAGATATTTGGCAGTGGTGCATAGAAAAACAAATATGGTTAACAGCTGCTCATATCCCAGGGACAAAAAATGTTGAGGCAGATCGGGAATCACGCGTTTTCTCAGACAACAAGGAATGGATGATAAGATCTGATATTTTCCAACAGATCACAGATATCTGGGGGGAGCCCTCCATAGATCTCTTTGCATCCAGACTAAATCATCAGGTTCCATGCTATTTTAATTGCAAGATGCCTACAGAAAATACAAACCGATTGTGCAGAGGGATTGATGATAGTTCCAATGTGGCCAACCCAGAGTTGGTATCCCAAACTTCTTCGCATGTTAGTGGCTGTTCCAAGAGTGTTACCACAACAACGAAATGCCTTACAAATGCCGGAGATGCCACAAGAAGTCCACCCCCTATTCAGGAAAATGGTTCTGATTGCATGCAGATTGTCCGGCAATCCTATGAGACACAAGGAATTTCTCAAAAGGCAACCTCCATCATCTTACAGTCCTGGAGGAAAGGAACTACAAAGCAGTATTCATCTTACATCAAAAGATGGACTACATATTGTCATAAAGAACAGATTGATCCAGTTTCTGCCACTGTCCCACAGGCACTAGATTTTTTAGTGGAGCTATTTGAGTCAGGTATCGGTCACAGTGGTATTAACACTGCAAGGTCTGCTCTATCCAGTGTCTTAAAGCCTGTGGACGGGATGACTTTTGGAGCACAAGAGAGTGTCAAGAGGTTCTTAAAAGGAGTTTACGAAGCAAGACCCTCCAACCCAAGATATACTGAGACATGGGATGTGAGCAAGGTTCTGAACTATCTTAAGACAATCTCTATTACAGACTGCTCACTAAAGGATCTGACTTTAAAATTAGTCACTTTAATGTCATTAGTATCAGCTCAACGGGGGCAGACAATTCACTACTTGTCTTTGGAGGACATGGTTGTTTCAGAAACTTCTGACTTTTATTATCTCCAGGCCTATTAA

Transcript

ANN29583-RA

Protein

Uniprot

Uniprot term	Description
P27502	Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) OX=10655 PE=1 SV=1
P07572	Gag-Pro-Pol polyprotein OS=Mason-Pfizer monkey virus OX=11855 GN=gag-pro-pol PE=1 SV=2
P03364	Gag-Pro-Pol polyprotein OS=Squirrel monkey retrovirus OX=11856 GN=pol PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan