Detailed information of ANN29880-RA in Montipora grisea

Genomic Location: Scaffold_797__1_contigs__length_73122:43253...43708
NR annotation: MBF2761275.1, ribosome maturation factor RimP [Ectothiorhodospiraceae bacterium AqS1]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q0A795Ribosome maturation factor RimP OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rimP PE=3 SV=2
Q1QSY8Ribosome maturation factor RimP OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=rimP PE=3 SV=1
B7V1F8Ribosome maturation factor RimP OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=rimP PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0022091 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17384
all species →		DUF150_CRimP C-terminal SH3 domainDomainInterproscan
PF02576
all species →		RimP_NRimP N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028998
all species →		DomainRibosome maturation factor RimP, C-terminalInterproscan
IPR036847
all species →		Homologous_superfamilyRibosome maturation factor RimP, C-terminal domain superfamilyInterproscan
IPR003728
all species →		FamilyRibosome maturation factor RimPInterproscan
IPR035956
all species →		Homologous_superfamilyRimP, N-terminal domain superfamilyInterproscan
IPR028989
all species →		DomainRibosome maturation factor RimP, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33867
all species →		RIBOSOME MATURATION FACTOR RIMPInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000028
all species →		Biological Processribosomal small subunit assemblyInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0042274
all species →		Biological Processribosomal small subunit biogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09748rimP; ribosome maturation factor RimP-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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