Gene detail

Detailed information of ANN29884-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:35605379...35620924
NR annotation: XP_020611792.1, inactive tyrosine-protein kinase transmembrane receptor ROR1-like isoform X1 [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN29884-RA

ATGGCGGATCTGCTGACGTCATACGACGGATTCAGGGCAAATTCCCCGGTGTGCGAACATTACTCTGGAGGCCAGCTATGCGATCCTTACCTAAAAGGTCAGCAGGTTTATGTCAACCCGTCACGTGCATCCCAGGCCCAGACGGGCAATCGAGTGGAGATCAACTATAACATGCTAAATGGATACGTATCTTCAGGATGCAAGAATTATGTGCTGCCAACCTTATGCAACTACGCTTTCCCGCCTTGTGACCAATCTTACTCTGCTGCGAAACCGAAGAAATTCTGCCGAGATGACTGTTTGATTTTGAAGAACGACATTTGTGAGTGGGAGTTTAAGCAAATTAGCAGACATCCGTATCTTTCTCATCTGTTGCCCAATTGTTCCAGTATGCCGACTGTCGGGGATCCTGATTACAAGAGGTGCATACGGGTTGTCCCTAAAGGATCTCGACCAAGATTCAAAGTCTTCTTGGAGGACATCACTATGTTTGAAAAGAAGCCCGTCATATTCAAATGTCGATTAAGCGCGAAGAATCTGGAAACCAACATCACGTGGTATAAGGACGGCAAACCCGTTGGCGATACTCATCGAACTTACAAGATTACCGCTTACCGCTGGGGATCGCGGCTCAGGATCCGACGGGCGAGAGCGGGGGATGCTGGGACTTTTCAGTGTGTGGTGGAAGGTCCCGGGGGAACAGTTACCGCAAAGGCGAGGTTGAAGATTAACCCACTCGTCAATACCCCTCCAAGCGCAAGTACGACGCGTTTCAGATTCGAATATCTTCGAGACGTTGAAAGAAACGCCGACAAGAATGCATTTAAACCAGTTGGCTTGCTCGACAATTTAACCTACCTAACCACTTTTACAAACACATACAAATCTGAACAACCCTCAGAAGATTCGCATCCGTCCTTTGAAAATCCGGGGACTCTTTCGCCTCTTGGCTTGTGTGAGACGTACCGCGGTCAGTCATGCGCAGAATTTATTGGTAATCAGAGCATCTGGGTTCATTACAGAGGTCATCAGCAGACAATTGAGAGAGAACTGGGAATGGCACTCAATGTGATAAAGGCAGCCAATCAGATGTCTCCTGGTTGCACCAAGTATGGCATACCCGCCATGTGTTTTCACATCTTTCCGACGTGTGACGCCGAAGAGCTTGATTCCAAGCCTCGGTTATGCCGAGAAGACTGCTTCGCTCTCTTCGACGACATCTGCTTAACTGAGCTGCAGTTTGCAGGAATGAATCCCCTTTTCAAACAAGTTCTTCCCAACTGTTCTGCTCTTCCTACGCGTGACAACAAAGACCATTCTTATTGCACCTCACTTGGGATTCCAGGATTGGACAATACGCCTGCCCCTCCTCAAGACTGGCCTATGCGGGAGGTTCAAGTCCACTCGTTCTCATTTCACGCAGATCACACATGCTACAACGATACTGGTAAAACATACCTTGGGCGAAAGAACTTTAGCAAGTCTGGTCGCCCCTGCCGTCCGTGGCCTACCATGGATCCCCCGGGGCATAACTACTGCCGTAATCCGGGAAACCTACGTGAAAGCCCGTGGTGTTATGTGGGGCCGGACGATGAAATGGAGTCTTGTGACATAAACAAGTGCACGGCAGTTGGTCCGTCCGCACAAGCTTTAAAACATGTTCGCCCGGTCGGCCGAACCATCTACGTCATTTCCGCTATCATGGCAGTCCTGATTGTGGCTTTCTTGTCAATCATCGTGTATCTCAAAGTGCAGCACAGTAAAAGCGCACTTCCGAAAAGTGACCAGGCGTCTTCCGGTTCAATCTCCAAAAGTACCCAGAGTACCCTGCAACAGCCTTGCTTTGATCTGAAGCAAAGCATAAGCGAAATCAAGTCCTGTGTTTTTAATCAGAACCATGCGGATGTGAGCCAAGGCAAAGTAAAGTTCCTCGAGGCTCTAGGCGAGGGCGGATTCGCTAAAGTGTGCAAAGGAGCCCTGATCAAACAGAACTCCGAGTTATCAGATACGGAAATCGCCATTAAGCGGCTCAAACACGACGTCCCTCCGGCTGCTGTGGAAAATTTTAAAAGGGAGACTTCGATCCTTGCCAGTCTGCAGGACATCAACATACTATGCCTTATTGGCGTGTCCGCTGGCGAAGAACCACGCTTCATGATGTTCGAGTATTATACCGACATGGACCTGTATCGATTCTTAGTGGACAACGCGTCCAAGCTGTCTGGGTTAATACCGTGCGATCTCTCAGAATATGACCTGTTGTTGGACTTCGCGCTGCAAATCGCCTCTGGAATGGACTTCCTTGAGGAGAATAACTTTGTGCATCGCGATCTTGCGGCCCGGAACTGCTACGTTACTGCAGACAATATCGTGAAAATATCCAACCTTGGCATCGGGAGCTACAAATACCCAGGGGACTATTCCTGGGTGCATAGCAGTGCTCTACTTCCGGTGCGATGGATGGCGCCAGAAGCGCTGAATACTTTGCAGTTTTCCCACCGTTCAGACGTCTGGTCTTACGGCGTGTTGCTATGGGAACTGTATACCTTCGGGAGCCAGCCATACGCCGGGTTCACCAATCAAGAAGCTATTGAGCGAATACGAGATCTGCAAGTACTCTCTTGCCCCGATCATTGCCCCGCCCGGATGTACGGGTTGATGCGGGAGTGCTGGGAGGAATCCCCCTCGGATAGACCCCCGTTCTCCGAGAGTTGCTCCCGGTTGCGAGAATGGGCTGGAGACTCGATCGCGGAGAGCCATTAG

Transcript

ANN29884-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01973	Inactive tyrosine-protein kinase transmembrane receptor ROR1 OS=Homo sapiens OX=9606 GN=ROR1 PE=1 SV=2
Q9Z139	Inactive tyrosine-protein kinase transmembrane receptor ROR1 OS=Mus musculus OX=10090 GN=Ror1 PE=2 SV=2
Q01974	Tyrosine-protein kinase transmembrane receptor ROR2 OS=Homo sapiens OX=9606 GN=ROR2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001743 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR018056 all species →	Conserved_site	Kringle, conserved site	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR041775 all species →	Domain	Ror-like, cysteine-rich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0010976 all species →	Biological Process	positive regulation of neuron projection development	Interproscan
GO:0014068 all species →	Biological Process	obsolete positive regulation of phosphatidylinositol 3-kinase signaling	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN29884-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.