Gene detail

Detailed information of ANN29932-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:36473241...36482447
NR annotation: XP_020631626.1, hypermethylated in cancer 2 protein-like isoform X3 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN29932-RA

ATGCGAGAAGACAATACTGATGTCGACTTGAAGGACTATTCCGCCACGGTCAGATATCTTGAACAGCTTCAGGAAACCAGCATTAAGACATTCACTGCGGAATTGCAGAAAAGCGGATCTGAGAACTCCGCGGAACCCGAGTCCCCCGCGCCATTCAGCATGTATGCCCCTGGAAGAGGGTTGTATGGATCTCAACCAGTGGGGACGAAAGTTTCAAACCAAGACCAGCGTGGAAGATGTTTAGCATCGAGAATGCGAGGATTCAGTAGTTTCAATTCATTTAACCAAGAAGAAATTGAGCCCGGACTCGGAGGCGAGAGAATGATTTTATCGGAGAGGGGAGCCCATATGTTTGATTATCATTATACGCAGCACAATACGCATTGTGGAATGTCCACAACGGCTGGTCTAAACTTTGCGAACGTAGGTAACACGACAAATGGATTTGCGGCCGAAAATTCCACCGCATCGTTCTCTCGAGGCGTTGGAAGCAATTGTTTATCCCCAACCCTTCAAAATTGTCCACAGTCGATTAGCATGAACCCTTTAGCTGGCTTAACAGAACTGGCGGAGAAAGCCAACTTCACGTCTGAACTCTCGCAGAATGGCGTCGCCGTGTCTCGGTTTAGCTCTCAACAGGGCCGCGGTCAAATAAATGGCCAGGCCGTACAGTATAGCTACCCAGAAGCACCAAGAAGCCGGAGCTGGTCGGGATCGACTCATGAAAGCGCAGGAAACTTCCTCAATGGCAGACAACAGGCGTTTCAAACGGATGACTTCTCGCCGGCTCTTTCGACTGGCGGTTCTGTGTTCAGTGACTCAGAGCTTGGGAGCCCGTGTCAGCCGTCGCGAGCGCGGCAATTTTTTGCCCATAGTGAGTCGGACTCGGACATTACGCCGACAGAAGCAAGTCCATTTGATAGATCGAGAACAGCATATCAGAACTACACCTCGAGATCGTTTGCGAACTACCGGCTTTGGAGCAACCAAGCCGAGTCAATCACGCCTAATGTGACAGTGGTGCCCGATCCGCGAAGTAAACTATCGCAGTTGTTCAGGTCTGGAAGGCGGACCAAGTCTGAAGAGATTCTCAAGGAACACCTGCAAAATTTCAGCAAGTTTTTGCCTCCGCAAGGAGAGGAAGAAGAGGAGAAAGCGAGTCAAAACGACAACGAGAAAAGCTGGAATACTGATGACTCAATTAAGGAGAAAAAGCCTTCGACAGTGGCATCGAGCGCGCAGGAATCTAGCTCCAGTCCTAGCGAAGAGAACACTGTATTTCCATGCAAGTGGGTTGGATGTGATGGTGTTTATTCTGAAAGAGATGACTTGGTTCGACACATCGAGAAGGTTCACATCGATCAAAGGAAAGCGGATGACCTTTACATTTGTTACTGGAAAGATTGTAGCCGGCAAAGGAGGGCATTCAATGCAAGGTATAAATTAGTCATTCACATGAGAGTTCATTCGGGAGAGAAGCCTAATCGATGTACGTTCCCTGGATGTAACAAGGCCTTTTCAAGGTTAGAGAATCTAAAAATCCACATGAGATCACACACTGGGGAGAAACCTTATCTTTGTCAGCATCTTGGCTGCCCAAAGGCTTTTAGTAACTCATCTGACAGAGCCAAGCATCAGCGAACACATCAGGATACGAAACCATATGCTTGCCAAGTTCCTGGGTGTCCGAAGAGATACACTGATCCAAGTTCACTCAGAAAGCACTTTAAACAGCACGCAAATGGCAAGATGCCTCAACAGAATTCAAGTGCAAAGTCAAAACAGAAACCTAGAGGAAACAGACCATCCAAAAGAGAACTACTGTGTGCTGGAGTGACACGCCCTTTGTCCGACTTCAGTTTTATAGACGACTATCAAGCCAGAAAGCGACAGAAGACATTAGATACTCTGCGGCAGACAACCGAGAAGAAGCTAGCCCTTGAAAACAGTTTCGCTCATGTTGATGCCCAGAGTGCATGGTATGGCACGGATAATCTGTACAGCCAGTTCAGCCCGCCGCCACCACTTCAACCTGTTGCAAGAGCAAGTACACCGACAATGGAAGAGGAACAAGGCTCCCTCCGCTATACCCAAATATTAAGCACAATAGAAATTCCAACTTTTGAGGACACACTGAAACCTCTGACAAGTGGATATTCAACATAA

Transcript

ANN29932-RA

Protein

Uniprot

Uniprot term	Description
Q8NEA6	Zinc finger protein GLIS3 OS=Homo sapiens OX=9606 GN=GLIS3 PE=1 SV=5
Q6XP49	Zinc finger protein GLIS3 OS=Mus musculus OX=10090 GN=Glis3 PE=1 SV=2
Q8NBF1	Zinc finger protein GLIS1 OS=Homo sapiens OX=9606 GN=GLIS1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043359	Family	C2H2-type zinc-finger protein GLI-like	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45718	TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09232	GLIS1_3; zinc finger protein GLIS1/3	-	Transcription factors	ko03000	deepkoala