Detailed information of ANN29954-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:36856626...36875557
NR annotation: XP_029207070.1, polypyrimidine tract-binding protein 1-like isoform X1 [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q29099Polypyrimidine tract-binding protein 1 OS=Sus scrofa OX=9823 GN=PTBP1 PE=2 SV=2
Q00438Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ptbp1 PE=1 SV=2
P26599Polypyrimidine tract-binding protein 1 OS=Homo sapiens OX=9606 GN=PTBP1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005087 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11835
all species →		RRM_8RRM-like domainDomainInterproscan
PF13893
all species →		RRM_5RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)DomainInterproscan
PF00076
all species →		RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504
all species →		DomainRNA recognition motif domainInterproscan
IPR021790
all species →		DomainPTBP1-like, RNA recognition motif 2Interproscan
IPR035979
all species →		Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR006536
all species →		FamilyHnRNP-L/PTBInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15592
all species →		MATRIN 3/NUCLEAR PROTEIN 220-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0043484
all species →		Biological Processregulation of RNA splicingInterproscan
GO:0006397
all species →		Biological ProcessmRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN29954-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP