Detailed information of ANN29991-RA in Montipora grisea

Genomic Location: Scaffold_2359__1_contigs__length_43422:32542...33927
NR annotation: EED33779.1, peptidyl-prolyl cis-trans isomerase A [gamma proteobacterium NOR5-3]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P42693Peptidyl-prolyl cis-trans isomerase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=rotA PE=3 SV=1
P0AFL5Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O157:H7 OX=83334 GN=ppiA PE=3 SV=1
P0AFL4Peptidyl-prolyl cis-trans isomerase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ppiA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0019861 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00160
all species →
Pro_isomeraseCyclophilin type peptidyl-prolyl cis-trans isomerase/CLDDomainInterproscan
PF03740
all species →
PdxJPyridoxal phosphate biosynthesis protein PdxJDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002130
all species →
DomainCyclophilin-type peptidyl-prolyl cis-trans isomerase domainInterproscan
IPR029000
all species →
Homologous_superfamilyCyclophilin-like domain superfamilyInterproscan
IPR004569
all species →
FamilyPyridoxal phosphate (active vitamin B6) biosynthesis PdxJInterproscan
IPR020892
all species →
Conserved_siteCyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteInterproscan
IPR036130
all species →
Homologous_superfamilyPyridoxine 5'-phosphate synthaseInterproscan
IPR013785
all species →
Homologous_superfamilyAldolase-type TIM barrelInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30456
all species →
PYRIDOXINE 5'-PHOSPHATE SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000413
all species →
Biological Processprotein peptidyl-prolyl isomerizationInterproscan
GO:0003755
all species →
Molecular Functionpeptidyl-prolyl cis-trans isomerase activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0008615
all species →
Biological Processpyridoxine biosynthetic processInterproscan
GO:0033856
all species →
Molecular Functionpyridoxine 5'-phosphate synthase activityInterproscan
GO:0006457
all species →
Biological Processprotein foldingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN29991-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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