Gene detail

Detailed information of ANN30015-RA in Leptoseris scabra

Genomic Location: Scaffold_12__1_contigs__length_40020851:38548345...38573129
NR annotation: XP_044164466.1, uncharacterized protein LOC114971451 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN30015-RA

ATGACAGATATATTGTGCCGATGGCTTAACGAGGATGTTAATCTGAGCAGAATTATAGATCCAACAAACATCGCAAAAGAGTTTTCCACTGGATACCTGCTTGGAGAACTCCTGAGCAAGCATGGTCTGCAAGGAGACTTTTCATTCTTCTCTCAAAACACAACTTCTGACTCCAAGCTTCATAATTTCACCCGACTGGAACCAACCCTGAAACTGCTGGAAGTACCTTACAATACCAATGTGGCACGGGCGATTATGAATGAGAACCATAGCGCTATCACAAGACTAATGTACCAGCTGTTTATAGCACTTGGAAAGAAAAATAAAATGGGTTTGACTGAAATTGCTATGGCAAACAGGAGGCCAACTGGCCCAGTGAAGCTAGAGAGCATTGAAAGTGGCCTTTATAAAGAGAGACTGAAGCAACTCACCAAACGTCAAGTGGATTTGAACTTCGAGCAGCTGGTTCAGAGATATCAAGCTAAACAGAAGGAGCAGGAGGAGATAGCTTTTAAGGCAAAGTTTGAGGAAGAAGAGAAAATGAGAAAGTACTTACAAGGACAAAGGCGACAAGGGTTAGATAAGTCACGACAGGCGAGGCAGAAACAACTTGAGATGATGGATAAAATAAGGGATGCAACTACTAAGATCCCCAAACCACCAGAGTCTAAGAAATCTGCCAAATCACGGACGGAAATGCGGCGCCAAAGAGAAGCGGAGGAGGTGAAAGAAAGTATTGACGCGTTTGAAGCGAGCCTGAGGGCCGTGATTCCACCAGCAAGTCCAATAGGATTGGAGGGGGAATCTAACCGTGAAGTGGATGCTGAGATTGATGCGTTTCTGAGTTCAAAATCCCCCAAGAAACCAGTGGATCCGCTGTCATATATCAAACCCGGTTCAAATGATGATTACATCAACAAAATCAGGACAAGACTGGAGGAAGACTCCGTCGCCAGGAAGGAAAGAGAAAAAAGAAGAAGACGAGTTTTGATTGAGCAGTTGAAAGCACACGAAGCTCAGGAGGAAGCTCATCGTGAGGAAATGTTGGTAAACAGACTCATGAGACAGTCACAGCAAGAGAGAAGAATTGCTGTTCAACTCATGCAGGTTCGTCATGAAAAGGAAGTTATTCGACAAAACAGGATTTTTAGAGAAAAACAGTACGCAGAAAGAAGACTGAAAGATTTTGACGATGCGCTAACGAGAGAAGCGGAGCTGTGTCGTCAGGCCAGATTAGAGTATGCCGAGGAAACCAGGAAAGCCCAGGAACTACACGATAAAATTAAGGGCGAGATTGCCGAGGCAAAGTACAACAAGCATTATAACATCTGTTGGGAGGTCTTATCACAGATTGTGGACTTTTCTTGTAAAATTGGAGAATACAGGGAACTGACTGAAAAACTGATCCCACCCAAGATGTTCAGGGAGTGGAAAGCATTGTTTCTCGAAGGAATTCCCATATACGAAGACGAGCCGGCGGAAGCGTCCAACACTGAACTCGCTAAACAGAGAGAAATCGAAAAAGAAAAAGAAAATTTGATGGACGAAGGAGACTTCTTAGAGTACAAGAATTTAATAGGCGAATGGGCGCCAGTGGAGGGATCAGAAATCCAAGGACCTGCAAAGGATAATGCGGTGCTTGGACACATTATCCACAGACTGTTTAACATCGTTTCACCTCCAGAGCCTCCTCCGCCTCCACCGGAGTTTCCACCGTTTCCAATCAAGGTCTGTTTTCTTGGAAAGTTTTTCAGTGGAAAAACTTCAACCATTAATAAAATTCTTGAAGGTCATCGAATGGTGCGTCTTTCCGTTGATGATCTTGTTGCCGAGGCTGTAGAAGCTTTTAAAAACAATGAATGCATCGAAGAACCACCTGAATTGCCAGCCATAACAGATGAAGAGACTTCTCCCAAAAAAGTGAGCATCCAAGACCAGCCAGCAGGCGAGTCCCAGGCTACCACGCCACAATCAGCTGCGGTTGAAGAGGGGACTGGGGACAGCAAAGAAACTGATGATGCCAACAAAGCTGAAGACAAACAAGGCAGTGAGGCAGGAGAAAGCGAAGAGAAGAGAGATAAAACAAAGGAAGAACTAGAGAAAGAAAACACAGAAGCTAAAGAAGACGAAAAGAAGACATCATCAAAATCAAAGGAACCAGAGCCAGCATCGTCTAAAACCAAAGGACCCACGCTGACCACTCGCGCCAAGCTCGGATCAAAGGCTTATGGTTTCCTCAAAAAGGGAAAAGCTACACCGGATCAGCTGTTAGTTGATATCATGGTGGAATCTGTCAGGATGAAAGAAGGTTCCGCTGAGGAGCTGCAGAAAATGGGCGAAGATTTGAAGCGATTAATTAACGTCAGAGGGGCGTACCGTGGACATTGCACAAGAGCAGTAAAGGCGGCAAATGAAATTATGGAGTCGTATTTGCCTAACTTGGACGCGCTTGAAGACGACTCTGCAGCAGAATGGAACGACTCGCTACAGAATCAGAAGATTGAGCTCGCTGTTCCAGAAGATAAAATTGAAGAGGAAATTGCGCAAACACTTGAATACACCGATGATTTGATGGGACAAAAGAACAAGATTGCGAAATTTCTTCGCGATGTGAAAGCTCAAGTTAAACAGAAACAGGAAGAAAACAAGTCAGCGAGCTTCAAATCTACGACGAAGAAAGAAGCGATTCATGTTAAATTACCGAAAATTACATTGAAGTCCTTCTCAGGAAACCCTTTGGAGTGGCTGTCGTTTTGGGACAGTTTTCAAGCGTCTGTTGACAAAAATTCCGACATTAGCGGCGTGGATAAAATGAATTATTTGTGCGGGCTATTGAAAGGAGAAGCGGCAAGAGTTATTCAAGGTTTACCATTGAGTGAAAGCAATTACAAGAGGGCCGTCGACCTACTCAAGGAGCGTTTTGGGCAGAAGCAAGTGTTAATCAACGCTCACATGGATGCTTTGCTGAAAATTCCAGTTGCGACAAATGATGTAAAGAAATTGAGGTCTCTTTATGACGCGTGTGAAGGATATATACATGGATTGGAATCGCTAGATGTTTATCCAGAATCTTATGGAGACTTGCTCATCCCTATAGTGATGAAGAAATTACCCGAAGAAGTGAGGCGTATTATGTTGAGAAGTCATGATGAAACGACGTGGACTTTGGCTGACCTCAGAAAGCAACTTCGGCATGAGGTGGAGACAAGGGAGAAGAGCAGTCTAGGACAGTCTGACAAAGAAGTGTCAGCACCAAATCCTCCATTCAATTCCAAGTTCCCTACAGCGGGTGCTTTGTTCTCTGGTGCCTTGGGAGGAGAGAACTCCAAGAATGACTGCACGTTTTGTGATGGGCCCCACCCCTCGGACTCGTGTAAGATCGTCCCAGCAGTTGACCAGAGACTCGAATTTCTCCGCAATCAGAAAAGATGCTTCAGGTGCTTCAAGAAAGGTCACATGTCGAAGTCCTGCTACTCAAAGAAACGTTGTTCGCGGTGCAATGGGAAACATCATTCGGCGTTGTGTAAATCAGCTGGAATTGACGGGCATAAACATTCTGGAACAGTTCCAACCGAAGAAAATACAAGTAAGAGAAATCCTGAGAAAGAAGATTCGACCGTCCTAGAAGGATCTACACTCGTCGGCTCGACGCATACTTCTCAGGATACCATCTTACTACAGTCAGCACTTGTGGACGTTGCTGCAGGTTCGAGAAGTTGCCAAGCCCGCTTACTATTTGACAGTGGATCACAGCGCACGTTTATCTCTCAAGATCTGGCTAACAAGATTGGAGCTCAACCATTCAAGAAAGAAGAATTACTAATGAGCACGTTTGGTCATGACAAGAGGACCAAGATAGACTTCGAAACGGTCAGAGCCTGCCTCATGGCTGATGGAGAAGGAATCATCATTAATGCCTTGGTGTCCCCAGTAATATCACCTCCTATCTCTGCACATCTTCAGGATGATGACCTCAACTTCCCTTATCTACAAGGGCTTCGATTAGCGGATCCAGTCAGGACGAGAGGACCACTGGAGATAGACATCATCATTGGCAATGATTATTATGGGTCGTTAGTAACCGGAGAGATAATCAAGGGAGATGGGCCCATGGCTATGAATAGCAAGTTTGGTTGGCTCTTATCAGGACCAGTGATCCAAGCTGAACAGCCGAAAGAAATTATTGAAACGCACTGTTACAGAATCGAAATCAAGCCTGCTCAAGATGATGAAACGCTAAACGAAATCCTTCCTCGATTCTGGGAGTTAGATTCACTGGGGATCGCTGACTCGCCCCAACTTGAAGATGAAGTGCTCAGACATTTTAACGAATCCGTGAGCTTCAACGAACAAGAAGGAAGGTATACAGTCCAGTTGCCATGGAAACAAGATAGGCCGCCTCTGCCATCTAATCTGGGACTTTGCAAGAAAAGACTGTGTGCATTAGTGGGTCGTCTTGGAAGGAATCCAGAGCAGCTCGTGAATTATGATCAAATCATCCACAGCCAGTTAAAAGAAGGGTTCATTGAAAAGGTGGAAAATCCCTACCGTCACACTGGAACATTGCACTACATCCCTCATCACCCAGTTATTAAAGAAGAAAGAGCCACAACCAAGATTAGAATCGTCTACGATGCCTCTGCAAGAATCTCATCTGATGCTCCCAGTCTAAATGATTGTCTTCATGTTGGACCGTCACTTCTACCAGACCTGAGTGCGTTGTTGATGAAGTTTCGAGTTCCTCAGATAGCCATGACAGCAGACATCGAAAAGGCCTTTCTTCAAGTGGGATTGAGTGAAGTCGACCGGGATGCAACAAGGTTCCTATGGATTAAGAACATCCAAGAGCCAATCGATGTAGAAAGGAACATTGAATGCTATAGATTTCGTCGAGTGTTGTTTGGAGCATCTCCCTCACCATTTCTTCTTGGAGCAACCCTAAGACATCACCTAGACAAGCAAAAGGATGACTGGGTCGCAGACGACCTGAAGAACTCCATGTACATGGACAATGTTCTCTCGGGAGTTAGTGTTGAAGAGGACGCGGAGCACTATTACCGTCATTCACGTCAACTCTTGGCTAGTGCAGGAATGAGCCTTAGGCAATGGACCACTAACTCAAGCATACTGAAGGAGAAGTTGGTCGCTGAAAATACCATGGCTACCGATAAGCCGAAAGTTCTGGGCCTGGAATGGGATTCAAATGCCGACACGATCAGTTTCCCTTTAATGAAAGTCGTATCAGAGTCTAAGGCGCTTCATGATCAGCTCACGAAGAGAAGCGTTTTGAGTATTGCTGCAAAGGTGTTTGACCCACTTGGATTACTTGAGCCATTCACGGTGAGAGCCAAAATAATGTTACAAGAATTGTGGAAACTGAAGGTTAGCTGGGACAGCCAATTGCCAGAGGAGCTCAAACCTCAGTGGTGGGCATGGTTCGAGGAGTTGGAAACCGTCCCGCTCATCCAAATTCGGAGATCGTATTTTCCATCAGGATGGAATGGAGCTCATCTACACGTCTTCGGAGATTCAAGCAAGAAGGCCTACGGAGCCGTGGCGTATCTCAGGGCAGAACAAGAAAGTGGGGTGCAAACCACTATTGTAATGGCTAAGAGCAAGATTACCCCTATGAAGTCACAGACCACGCCTCGCTTGGAACTCTTAGCATCATTAGTAGCGGCACGACTGTCCCATTTTATCTCGGAAAAACTCAAGCCTAAACTTGGACAGACAGAAATAACTTTATGGAGTGATTCTGAAATCGTACTGCATTGGCTATGTTCCAAGAAGCTACCAGATTCGTTTGTGTCAAGGAGGATTGAAGAAATTAAGAAACTAACGAACCAGCATCAATGGAGATTCTGCCCTTCTGCGTCTAACCCTGCTGATCTGCTTAGCCGTGGAGTTGCTATCGGTGTCTTGGTTGATGATTGCAACATTTGGTGGAAGGGCCCCCATTGGTTATGTGAGTCTGCAGATAAGTGGCCTGTTTGGAGGAGTTCCAGCAATCATGTGGAACAGGAGATACACTTGGAAGGCATGGAAGCCGTGTGCATGGCTACAGGGGAACCAAGCTCCAGCTTAATCAATGTCATTGATCCTGAACGTTACAGTTCTTTAAACAAGCTTTTGGCGGTAACGTCTCGTGTCATCCGTTTTCTAACGAATTGCAAGTCTGGTGAGGAAAACCGCAAATCTGGCCCCTTAACAACTCAAGAATTATCAATCGCCATGACACTGTGGATAAAGGCTGTTCAAGGGCAAGCTTTCAGCCGTGAAATACAGCACCTCTCTAGGAAAGACACCAAGCTATCTCCCCCACTTATCCGTCAGCTGCGCTTATATCTTGATGACAACGTTGTTCTTCGTTGCCGAGGAAGATTAGACAGTGCAGCCCTTGATGATCAGTCCAAATTTCCAGTATTACTACCCAGAAATGAGCATTTTACAAAGTTGGTTGCTCTAGCTGCACACTTACAAGTACTTCACAGTGGGGTCAGAGAAACACTCACGCAACTCCGACAGAAGTACTGGGTACCTCGTGGACGTCAGTTCGTTAGAAGCCTCGTACGCAAGTGTGTAACCTGTCGAAGGACCGATGGACCTCCATATCGACCTGTAAGTTCTCCGCCATTACCTACATCAAGAGTGTCGGAAGGTCAAGCATTTAGTACAACGGGTGTGGATTATGCTGGCCCCTTGTACGTCAAGAGCTCCACTGGAGACCAACGTCCCACCAAAGTCTATATTGCCTTATTCACATGTGCAGTAGTTCGAGCTGTCCATTTAGAAGTTGTGGAGGATCTATCATCGGAGTCTTTCATTCGAGCCTTCAGAAAATTTGTGAGCAGACGAGGTGTTCCAGAAAGACTTATTTCAGACAACGCGAAAAACTTCAAGGACTGTAGCAAGAGGATCACTTCCCTGTCTAATCAGATTCTGGAGGCAGAGAAAACGCAAAAACACTTGGCAAGTCATGGAGTAAAGTGGCAGTTTATCGTTGAAAGAGCCCCCTGGTAG

Transcript

ANN30015-RA

Protein

ANN30015-RA

MTDILCRWLNEDVNLSRIIDPTNIAKEFSTGYLLGELLSKHGLQGDFSFFSQNTTSDSKLHNFTRLEPTLKLLEVPYNTNVARAIMNENHSAITRLMYQLFIALGKKNKMGLTEIAMANRRPTGPVKLESIESGLYKERLKQLTKRQVDLNFEQLVQRYQAKQKEQEEIAFKAKFEEEEKMRKYLQGQRRQGLDKSRQARQKQLEMMDKIRDATTKIPKPPESKKSAKSRTEMRRQREAEEVKESIDAFEASLRAVIPPASPIGLEGESNREVDAEIDAFLSSKSPKKPVDPLSYIKPGSNDDYINKIRTRLEEDSVARKEREKRRRRVLIEQLKAHEAQEEAHREEMLVNRLMRQSQQERRIAVQLMQVRHEKEVIRQNRIFREKQYAERRLKDFDDALTREAELCRQARLEYAEETRKAQELHDKIKGEIAEAKYNKHYNICWEVLSQIVDFSCKIGEYRELTEKLIPPKMFREWKALFLEGIPIYEDEPAEASNTELAKQREIEKEKENLMDEGDFLEYKNLIGEWAPVEGSEIQGPAKDNAVLGHIIHRLFNIVSPPEPPPPPPEFPPFPIKVCFLGKFFSGKTSTINKILEGHRMVRLSVDDLVAEAVEAFKNNECIEEPPELPAITDEETSPKKVSIQDQPAGESQATTPQSAAVEEGTGDSKETDDANKAEDKQGSEAGESEEKRDKTKEELEKENTEAKEDEKKTSSKSKEPEPASSKTKGPTLTTRAKLGSKAYGFLKKGKATPDQLLVDIMVESVRMKEGSAEELQKMGEDLKRLINVRGAYRGHCTRAVKAANEIMESYLPNLDALEDDSAAEWNDSLQNQKIELAVPEDKIEEEIAQTLEYTDDLMGQKNKIAKFLRDVKAQVKQKQEENKSASFKSTTKKEAIHVKLPKITLKSFSGNPLEWLSFWDSFQASVDKNSDISGVDKMNYLCGLLKGEAARVIQGLPLSESNYKRAVDLLKERFGQKQVLINAHMDALLKIPVATNDVKKLRSLYDACEGYIHGLESLDVYPESYGDLLIPIVMKKLPEEVRRIMLRSHDETTWTLADLRKQLRHEVETREKSSLGQSDKEVSAPNPPFNSKFPTAGALFSGALGGENSKNDCTFCDGPHPSDSCKIVPAVDQRLEFLRNQKRCFRCFKKGHMSKSCYSKKRCSRCNGKHHSALCKSAGIDGHKHSGTVPTEENTSKRNPEKEDSTVLEGSTLVGSTHTSQDTILLQSALVDVAAGSRSCQARLLFDSGSQRTFISQDLANKIGAQPFKKEELLMSTFGHDKRTKIDFETVRACLMADGEGIIINALVSPVISPPISAHLQDDDLNFPYLQGLRLADPVRTRGPLEIDIIIGNDYYGSLVTGEIIKGDGPMAMNSKFGWLLSGPVIQAEQPKEIIETHCYRIEIKPAQDDETLNEILPRFWELDSLGIADSPQLEDEVLRHFNESVSFNEQEGRYTVQLPWKQDRPPLPSNLGLCKKRLCALVGRLGRNPEQLVNYDQIIHSQLKEGFIEKVENPYRHTGTLHYIPHHPVIKEERATTKIRIVYDASARISSDAPSLNDCLHVGPSLLPDLSALLMKFRVPQIAMTADIEKAFLQVGLSEVDRDATRFLWIKNIQEPIDVERNIECYRFRRVLFGASPSPFLLGATLRHHLDKQKDDWVADDLKNSMYMDNVLSGVSVEEDAEHYYRHSRQLLASAGMSLRQWTTNSSILKEKLVAENTMATDKPKVLGLEWDSNADTISFPLMKVVSESKALHDQLTKRSVLSIAAKVFDPLGLLEPFTVRAKIMLQELWKLKVSWDSQLPEELKPQWWAWFEELETVPLIQIRRSYFPSGWNGAHLHVFGDSSKKAYGAVAYLRAEQESGVQTTIVMAKSKITPMKSQTTPRLELLASLVAARLSHFISEKLKPKLGQTEITLWSDSEIVLHWLCSKKLPDSFVSRRIEEIKKLTNQHQWRFCPSASNPADLLSRGVAIGVLVDDCNIWWKGPHWLCESADKWPVWRSSSNHVEQEIHLEGMEAVCMATGEPSSSLINVIDPERYSSLNKLLAVTSRVIRFLTNCKSGEENRKSGPLTTQELSIAMTLWIKAVQGQAFSREIQHLSRKDTKLSPPLIRQLRLYLDDNVVLRCRGRLDSAALDDQSKFPVLLPRNEHFTKLVALAAHLQVLHSGVRETLTQLRQKYWVPRGRQFVRSLVRKCVTCRRTDGPPYRPVSSPPLPTSRVSEGQAFSTTGVDYAGPLYVKSSTGDQRPTKVYIALFTCAVVRAVHLEVVEDLSSESFIRAFRKFVSRRGVPERLISDNAKNFKDCSKRITSLSNQILEAEKTQKHLASHGVKWQFIVERAPW

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2IA00	Sperm flagellar protein 2 OS=Sus scrofa OX=9823 GN=SPEF2 PE=2 SV=1
Q9R095	Sperm flagellar protein 2 OS=Rattus norvegicus OX=10116 GN=Spef2 PE=1 SV=2
Q9C093	Sperm flagellar protein 2 OS=Homo sapiens OX=9606 GN=SPEF2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002663 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF05585 all species →	DUF1758	Putative peptidase (DUF1758)	Family	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF06294 all species →	CH_2	CH-like domain in sperm protein	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR008737 all species →	Domain	Peptidase aspartic, putative	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR010441 all species →	Domain	CH-like domain in sperm protein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955 all species →	RETROTRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN30015-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.