Gene detail

Detailed information of ANN30059-RA in Montipora grisea

Genomic Location: Scaffold_435__1_contigs__length_96596:77073...78299
NR annotation: MCE2400611.1, transcription termination factor Rho [Candidatus Poribacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q7NXP1	Transcription termination factor Rho OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 GN=rho PE=3 SV=1
Q9HTV1	Transcription termination factor Rho OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rho PE=3 SV=1
O67031	Transcription termination factor Rho OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rho PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF07497	Rho_RNA_bind	Rho termination factor, RNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011113	Domain	Rho termination factor, RNA-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR004665	Family	Transcription termination factor Rho	Interproscan
IPR000194	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR041703	Domain	Transcription termination factor Rho, ATP binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46425	TRANSCRIPTION TERMINATION FACTOR RHO	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006353	Biological Process	DNA-templated transcription termination	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0008186	Molecular Function	ATP-dependent activity, acting on RNA	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03628	rho; transcription termination factor Rho	-	Messenger RNA biogenesis	ko03019	deepkoala