Genomic Location: Scaffold_2410__1_contigs__length_42959:41011...41877
NR annotation: MYD78452.1, DNA-directed RNA polymerase subunit alpha [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN30087-RA |
| Transcript |
| ANN30087-RA |
| Protein |
| ANN30087-RA |
| UniProt accession | Description |
|---|---|
| A4XZ65 | DNA-directed RNA polymerase subunit alpha OS=Ectopseudomonas mendocina (strain ymp) OX=399739 GN=rpoA PE=3 SV=1 |
| Q1IFU1 | DNA-directed RNA polymerase subunit alpha OS=Pseudomonas entomophila (strain L48) OX=384676 GN=rpoA PE=3 SV=1 |
| A5VXS2 | DNA-directed RNA polymerase subunit alpha OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=rpoA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012164 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03118 all species → | RNA_pol_A_CTD | Bacterial RNA polymerase, alpha chain C terminal domain | Domain | Interproscan |
| PF01000 all species → | RNA_pol_A_bac | RNA polymerase Rpb3/RpoA insert domain | Domain | Interproscan |
| PF01193 all species → | RNA_pol_L | RNA polymerase Rpb3/Rpb11 dimerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036643 all species → | Homologous_superfamily | DNA-directed RNA polymerase, insert domain superfamily | Interproscan |
| IPR011263 all species → | Domain | DNA-directed RNA polymerase, RpoA/D/Rpb3-type | Interproscan |
| IPR011773 all species → | Family | DNA-directed RNA polymerase, alpha subunit | Interproscan |
| IPR011260 all species → | Domain | RNA polymerase, alpha subunit, C-terminal | Interproscan |
| IPR036603 all species → | Homologous_superfamily | RNA polymerase, RBP11-like subunit | Interproscan |
| IPR011262 all species → | Domain | DNA-directed RNA polymerase, insert domain | Interproscan |
ANN30087-RA. This gene does have a gene model — the search simply returned no hit.| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003899 all species → | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0006351 all species → | Biological Process | DNA-templated transcription | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0046983 all species → | Molecular Function | protein dimerization activity | Interproscan |
ANN30087-RA.
