Gene detail

Detailed information of ANN30120-RA in Leptoseris scabra

Genomic Location: Scaffold_14__1_contigs__length_37721450:479867...499730
NR annotation: CAH3193232.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN30120-RA

ATGAACGTCACTTGTAACATCTCCCAGCCAAGCGAGATTCACGGCAGTAACTCTTCACTGGAATTAAATGGGAGTTTACCACTAAACTCCACTTGCTTAGAGTCAAACAATCCAGGGATGAGGACGGCCCCAGATTTCACTGATTTTTACACAGCTGCATTTGGTTCTTCCATCTTCATCATCGTAGTCTCCTTCGCCACCATCTTGGCCAACGGGTTTCTTCTTCTCGCTTTTTATGTCGATCCACTGAAGATCTTTCGCAACCCAACCACGTACTTTCTCATCGGTTTGGCCATAGTTGACCTCCTAACAGCACTGGTTCAAGAACCGATTTACGCCACCTGCTTCATGTTCCTGTACCTTCAGAATCCAGTTTTAATTTTAAAATGCAGGCCTGTCATGGATGTCACGAGGTATATCGCCGGATTCACCATGACCGTGTCCTATTTAATCGTTTTTGCCTTCACTGTGACACAGTATATCGTGGTTTCATCGCCACTAAAGTACGCCCGTTTGGTGACAAACAGAAAGGTAGTGATCAGTGTTGCGGCAATCTACCTTTATTCAACAGCATTCTCGTGTTTGCACCTTACTGGCGTGCCCGAAAATATTCTGCTTATGATTGAACTGTTCCTCCATGACTATGGATCAACGTCTATCACCATCGCTATCTACATCCTTTTGCATCGCGTCATGAAAAAGAAGATGGTGGCTGGAAACTCGCTTCAAGGCAAAGCGAACGCAGGTAGAGAGGACAGCAAACACAACCAAGTGCAGCGTAACTTTGTGCGCGTAAATTTCATGCTCCTAGCTGTGCTAATCACGTGCTCCATGCCCTCATCTATCGTGTTAACAATAAGATTATTCACTGAGGAATCCAAGGGTCCTTCGGTAAAAGTCGCGATTGGAAACCTGATGGTGGATAACCTGCTTTACTTGAAATTCCTGCTTGACCCGTTTGTGTACGCGTGGCGCATGGTGAAATACCGAGAGGCCTTTTTCAAAAGCATTCGTCGCCAAAAGACTGGAAAGAACGCGAACGAAAAACGAAACAATGTTACGGGAAGAGAAAACCAAGCGGTAACAGAGATCTCAAGCATAACCACATCAATTAAAAATACACCGTCGACCACATCAACGATTACTGTAAAACAATTACATGGCCAAGAAGTCAGACTAGAGGTTTCCGAAAGCGACCAGATCACGTTGGTAAAAAGACTAGTCTCTGACAAACTTAACATTCCTGTATCCCAGCAGAGATTGGTTTTCAAGGGGAAAACATTAGCAGATTCTTCCATTTTGAGTGAGCATCAGGTCACTGATGGAAGCAAACTCCACCTGTCCATTAGAAAGCAAGGTGATGGAGCTTCTAGCAGTGAAGATCCTAATGAGTTCTTTGTTCAGCTGAGAGATTTCCTCCGAGGACACTTCAGCTCTCAGGATACTGAAAAAGTGATGGCCAAATTCAAGGAGACAAAAGAACAAAGGTATAAAAAATCTGTATGGAACTCTCAGTTTAAAGAGTTGATCAGTACTTCAAGGAAGAAGGGCTTCTTTATCTTCACTGCGAAATTCTCCAAAATGAACGTCACTTGTAACATCTCCCAGCCAAGCGAGATTCACGGCAGTAACTCTTCACTGGAATTAAATGGGAGTTTACCACTAAACTCCACTTGCTTAGAGTCAAACAATCCAGGGATGAGGACGGCCCCAGATTTCACTGATTTTTACACAGCTGCATTTGGTTCTTCCATCTTCATCATCGTAGTCTCCTTCGCCACCATCTTGGCCAACGGGTTTCTTCTTCTCGCTTTTTATGTCGATCCACTGAAGATCTTTCGCAACCCAACCACGTACTTTCTCATCGGTTTGGCCATAGTTGACCTCCTAACAGCACTGGTTCAAGAACCGATTTACGCCACCTGCTTCATGTTCCTGTACCTTCAGAATCCAGTTTTAATTTTAAAATGCAGGCCTGTCATGGATGTCACGAGGTATATCGCCGGATTCACCATGACCGTGTCCTATTTAATCGTTTTTGCCTTCACTGTGACACAGTATATCGTGGTTTCATCGCCACTAAAGTACGCCCGTTTGGTGACAAACAGAAAGGTAGTGATCAGTGTTGCGGCAATCTACCTTTATTCAACAGCATTCTCGTGTTTGCACCTTACTGGCGTGCCCGAAAATATTCTGCTTATGATTGAACTGTTCCTCCATGACTATGGATCAACGTCTATCACCATCGCTATCTACATCCTTTTGCATCGCGTCATGAAAAAGAAGATGGTGGCTGGAAACTCGCTTCAAGGCAAAGCGAACGCAGGTAGAGAGGACAGCAAACACAACCAAGTGCAGCGTAACTTTGTGCGCGTAAATTTCATGCTCCTAGCTGTGCTAATCACGTGCTCCATGCCCTCATCTATCGTGTTAACAATAAGATTATTCACTGAGGAATCCAAGGGTCCTTCGGTAAAAGTCGCGATTGGAAACCTGATGGTGGATAACCTGCTTTACTTGAAATTCCTGCTTGACCCGTTTGTGTACGCGTGGCGCATGGTGAAATACCGAGAGGCCTTTTTCAAAAGCATTCGTCGCCAAAAGACTGGAAAGAACGCGAACGAAAAACGAAACAATGTTACGGGAAGAGAAAACCAAGCGGTAACAGAGATCTCAAGCATAACCACATCAATTAAAAATACACCGTCGACCACATCAACGATTACTGTAAAACAATTACATGGCCAAGAAGTCAGACTAGAGGTTTCCGAAAGCGACCAGATCACGTTGGTAAAAAGACTAGTCTCTGACAAACTTAACATTCCTGTATCCCAGCAGAGATTGGTTTTCAAGGGGAAAACATTAGCAGATTCTTCCATTTTGAGTGAGCATCAGGTCACTGATGGAAGCAAACTCCACCTGTCCATTAGAAAGCAAGGTGATGGAGCTTCTAGCAGTGAAGATCCTAATGAGTTCTTTGTTCAGCTGAGAGATTTCCTCCGAGGACACTTCAGCTCTCAGGATACTGAAAAAGTGATGGCCAAATTCAAGGAGGACTTCAAGATGTGGGTGTGGTCTCTCAGCCTTGACGACATTGAAAGAATGGCAGCCCTTCATATGAATGAGTCATCAAATTCACATTAA

Transcript

ANN30120-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0D261	Ubiquitin-like protein 4A OS=Xenopus laevis OX=8355 GN=ubl4a PE=2 SV=1
A4QND0	Ubiquitin-like protein 4A OS=Xenopus tropicalis OX=8364 GN=ubl4a PE=2 SV=1
B5X9S9	Ubiquitin-like protein 4A-B OS=Salmo salar OX=8030 GN=ubl4ab PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000404 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17840 all species →	Tugs	Tethering Ubl4a to BAGS domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041421 all species →	Domain	Ubl4, C-terminal TUGS domain	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46555 all species →	UBIQUITIN-LIKE PROTEIN 4A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006620 all species →	Biological Process	post-translational protein targeting to endoplasmic reticulum membrane	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0071816 all species →	Biological Process	tail-anchored membrane protein insertion into ER membrane	Interproscan
GO:0071818 all species →	Cellular Component	BAT3 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN30120-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.