Gene detail

Detailed information of ANN30232-RA in Montipora grisea

Genomic Location: Scaffold_153__1_contigs__length_180525:99166...101193
NR annotation: MYC75688.1, 1,4-alpha-glucan-branching enzyme [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN30232-RA

ATGATTGATGGCACGACTCTCATCAAGGCAGATCCTTTGCTAAAGCCATATACGGCGCAGTTGCGTGAGCGGTTCGCACACTATCAACGCTTCAAAGCAGAGATTGAGAAAACCGGTGGTATCTTAGGCGAGATCAGCCGGGGGCACCAATATTTCGGCTTCAATCGCGGAGAAAATGATGGTGAGACCGGGGTTTGGTATCGCGAATGGGCACCGGGTGCAGATTCCCTTGCTCTTATCGGCGACTTTAACAACTGGGATCGCGGTGCTCATCCAATGTCCGTCGATGATCGTGGTGTCTGGCATCTCTTCCTGCCCGATAGAAACTACGTCGATCGACTTACACACGGAAGCCGAGTCAAGGTGCATGTTGTATCAGAACTCGGTGGACTCGATCGGATTCCCGCTTATGTTCAACGCGCTGTTCAGGAGGGAAATGCCGATTTCACCGGACAGTATTGGGCATCACCGTCTCCGTATCAGTGGAAATATAGTCCCCCTTGTTTGGATGTCGGCACCGAGGGCTTGCGGATCTACGAGGCACACATCGGCATGGCACAGGAAGCGGAAAAGGTGGGAACGTTCGATGAGTTCACGCAAAACGTGCTACCCCGAATTGCAGATTTAGGCTATAACGCCGTGCAGCTGATGGCGGTCATGGAACATCCCTATTATGCGAGTTTCGGGTACCATGTAAGCAACTTCTTCGCCGTCTCAAGTCGTTTCGGGACACCGGAAGAACTCAAAGCACTCATTGATACCGCACACGGTATGGGTCTCTTGGTTATCATGGACCTGGTACACAGCCATGCCGTCAAAAACCTGAATGAGGGATTGAATCGCTTTGACGGCACAGCACACCACTATTTTCACGCCGGTGAAAAAGGTGAACATATCGCATGGGATTCGCGTTGTTTTGATTACAGCAAATACGAAGTGCAACGCTTTCTCCTGAGCAATATTCGTTATTGGCTAGGGACCTATCGGTTTGACGGATTCAGATTTGATGGCATCACAAGCATGCTCTATAGCGATCACGGGTTAGGACGGCAGTTTATTGACTATGCGGATTACTTCGATGCCAGCGTTGAACCGGACGCGATTGCCTACCTGATGTTGGCAAACGAAGTCGTTCACGCCGTCAATCCCACCGCAATTTCAATCGCTGAAGATATGAGTGGAATGCCCGGTCTCGCGCGTCCCATCAAGGAAGGCGGACTCGGTTTCGATTATCGGCTCGCAATGGGCATCCCAGATTATTGGATTCAACTATTGAAAGAGAAACAGGATGAAGATTGGCATATCGGCGAGATTTACGGCACGTTGCGTAACCGTCGGACCGGCGAGAAACATATCGCTTATGTCGAGAGCCACGACCAATCCATCGTTGGGGATAAGACGCTCGCTATGCAACTCATGGATACCGAACTCTACACGAACATGAGCACTTTCACAACAAGCCAGCGCATCGCTCGTGGCATTGCGCTCCACAAACTCATCCGACTGCTGACCTTTACTTTAGGGGGTGAGGGATATCTCAACTTCATAGGGAACGAATTCGGACACCCTGAGTGGATCGACTTTCCGCGTGCGGGGAACAATAACTCTTACTGGTATGCGCGTAGGCAGTGGCACCTTGTCGATGATGATACCCTCCGCTACAAACATCTCAACGCTTTCGATCGCGCCATGCAACACCTCGACGCAACCTACCATCTGCTTTCCGATGAAAACATCCATCTTTTATTTATTCACGAGGACGCGAAACAGATTGTCTATGAACGGGGTGGACTTGTCTTCGCCTTCAACTTCCATCCAACTGCATCTGTCACAGATTGGCGCGTCCCTGTCCCTCAGAAAAAGGATTATCGCCTTATTCTCAATACCGATGATACCGCTTACGGTGGCTATGGTGCTGTAGAGGGCAGTCATTATCCGTGGCAAGATGTCGCCATGGAGGGATATACACAATCCATCCAACTGTATGTCCCTGCTCGGAGTGCACAGGTGTTAGCATCGAATGTATGA

Transcript

ANN30232-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NKE1	1,4-alpha-glucan-branching enzyme OS=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) OX=747089 GN=GLC3 PE=2 SV=2
Q9Y8H3	1,4-alpha-glucan-branching enzyme OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=be1 PE=2 SV=3
Q96VA4	1,4-alpha-glucan-branching enzyme OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=gbeA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003447 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00128 all species →	Alpha-amylase	Alpha amylase, catalytic domain	Domain	Interproscan
PF02806 all species →	Alpha-amylase_C	Alpha amylase, C-terminal all-beta domain	Domain	Interproscan
PF02922 all species →	CBM_48	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR006047 all species →	Domain	Glycosyl hydrolase, family 13, catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR037439 all species →	Family	1,4-alpha-glucan-branching enzyme	Interproscan
IPR006048 all species →	Domain	Alpha-amylase/branching enzyme, C-terminal all beta	Interproscan
IPR004193 all species →	Domain	Glycoside hydrolase, family 13, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43651 all species →	1,4-ALPHA-GLUCAN-BRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003844 all species →	Molecular Function	1,4-alpha-glucan branching enzyme activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005978 all species →	Biological Process	glycogen biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0043169 all species →	Molecular Function	cation binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00700	GBE1, glgB; 1,4-alpha-glucan branching enzyme	EC:2.4.1.18	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.