Gene detail

Detailed information of ANN30374-RA in Montipora grisea

Genomic Location: Scaffold_6286__1_contigs__length_27395:12014...15771
NR annotation: XP_027054157.1, NF-X1-type zinc finger protein NFXL1-like isoform X2 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN30374-RA

ATGGCTAGCAACGACAGACCTCCCTACAGTCGAGGAGGAAGAGGTACCACAGGTTCTCATAGAAGGGTCGAAGGCAAAGGCAGGGGAGGCGATCGAGGAAGGAGCGACAGATCTTGGCAATTCCAGCCTGGCTACATTGCTAACAAGAGCAGGCCAATTGCAGGAACGACTGTGAACAGCAAGCAGGGAGGCTCTCCGAATTCAACACTCGAGGACGACAGGTGGGAGCCGTCTGCAGCTACAATGGCTCGAGTAGCTGCCATTAGAGAGAGTAGCATACGTCATGGAATGAGGGAGGGAGGGGGTGAAGAAGACGGAGGATTGGATTCGGGAAGCGATGAGGAAGAAGAAGGAGTAGGAAGGGAGGATGTAATCAAGAAGACACTGAATATGTACTACAAGGACCTGGGAGGTGGAGGAGAGGAATTTGGTTCTCCATTGCAGCTGGCCAGTGGATCATGTCTCGTGTGTCTGTCTGTCATCAAACGCTCTGAGGCCTGCATCCAACAGTGGGCAAGGGATGGAGTAAAGCAACAATCCCTCCTTTCTCCCGAGCTCTTTCCTGGTCTAGAGCTCATGTGGTCCTGCCCAAAGTGCAGGAGGGACTATAGGCAGTTGGAGTTTCCAGAGAAATACAGCTGCTTTTGTGGAAAGCAGATTAAACAAAAGTGCAGGGTAGAAGTATATGTTGTGGAGGAGGAACTTTACATTTTACGTTTTCTACATACACTGGCCATGGATGTTATGTTCAGTTCTGCCTTCCAGGTGGATCCACCAGTAGACCTCTGGCTCCTTCCTCACTCTTGCGGGGAGATTTGTGAGAAGCCTCTCCAGCCTGAGTGTGGTCATAGGTGTGTGTCTCTCTGTCACCCGGGGCCCTGTCCTCCCTGTCCAAAGACAGCTCAGGTGACCTGCTACTGTGGGCGGAGTCAGCCCATGGTGAAGAGGTGTGGCGTGAGGGGGTGGACATGCGGACGGGTCTGTGGGAGGGTGCTCTCCTGCGGAATGCACACATGCGAGTCACGGTGCCATGCGGATTCCAGATTTAATGTCTTTTTGTCTCACAGCCCTGTGGTAAACTTCTCTCCTGTGGACATCATCACTGTGAAAAGGTTTGTCATCCAGGCCCATGTGGCGACTGTCCTCAGTCAGGAGTCCGGACCTGTCCTTGTGGAAAGACAAGTCAGAACGCATGCATCCACTCATTGTCCATCTGCCGGCCTTGTCTCAGTTGATGACTCTTCCTCACTACAGAGCATACTCTGCCGTGTACCAAGGATGTACAAACCTGTGGAGACACTTGCAACAAGGTGGTTGGAAACAAGAAGTGGTAATTTATTGGAATGTAAAAAAGAATTACCATTTTCTCCCCAGCCTCTGGCCTGCGGTCAGCACGAATGCATGCGTCCATGTCACCATGGCAACTGTGGTCAGTGTTTGCAGATGGCTGTCAAACAGTGCCGGTGTGGTCGGAAGAGGAAGTCTGTCCCCTGTAGTACTGTGTACCTCTGTGAGGCTAAGTGTACTGTACTGAGGCAGTGTCGCAGACACCAGTGTAAGAGGAAGGTGATTGGACTCTCCTCTATGAACCAACCAAGTCATTACCCTTTCCCTCCTCCCTCCCTCTCCTCATGTTCATTCAGTGCTGTGATGGTAATTGTCCACAGTGTGAACAGGTCTGTGGAAGAATGTTGGGCTGTAGGAACCACAAGTGTGCTGCACCATGTCATGCAGGTGCACACACACACACACACACACACACACACACACACACACACACAAAACATACATACACACACATACACACACACACACACACAATTTTCACCTCTTCCTTGCACCCTCCCACTAGGTCGGTGCTATCCCTGTGTCTTGATGGTGGACATCACCTGTAACTGTGGTGCCACAAAGCTAACTGTCCCCTGTGGGAGGGAGAAGGTGACCAAACCACCCAAGTGCAAAGAATGGTGCAAAAACCCTCCATCTTGCCACCATCCTGAAAGAGAGGTAATAGACAGATGTATGGAGTCCTTCCTCAGTGTTCTACCCTCTCTCCTTCCTCCTCTCCCAGCTGCACTGCTGTCATTTTGGCCCCTGTCCCCCCTGCCGTCAGTGCTGTAA

Transcript

ANN30374-RA

Protein

Uniprot

Uniprot term	Description
A0JMY5	NF-X1-type zinc finger protein NFXL1 OS=Xenopus laevis OX=8355 GN=nfxl1 PE=2 SV=1
Q9FFK8	NF-X1-type zinc finger protein NFXL2 OS=Arabidopsis thaliana OX=3702 GN=NFXL2 PE=1 SV=2
Q6ZNB6	NF-X1-type zinc finger protein NFXL1 OS=Homo sapiens OX=9606 GN=NFXL1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01422	zf-NF-X1	NF-X1 type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034078	Family	Transcription factor NFX1 family	Interproscan
IPR000967	Domain	Zinc finger, NF-X1-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12360	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan